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Results: 1 to 20 of 28

1.

Homopolymer tract organization in the human malarial parasite Plasmodium falciparum and related Apicomplexan parasites.

Russell K, Cheng CH, Bizzaro JW, Ponts N, Emes RD, Le Roch K, Marx KA, Horrocks P.

BMC Genomics. 2014 Oct 3;15:848. doi: 10.1186/1471-2164-15-848.

2.

Bioguided isolation, characterization, and biotransformation by Fusarium verticillioides of maize kernel compounds that inhibit fumonisin production.

Atanasova-Penichon V, Bernillon S, Marchegay G, Lornac A, Pinson-Gadais L, Ponts N, Zehraoui E, Barreau C, Richard-Forget F.

Mol Plant Microbe Interact. 2014 Oct;27(10):1148-58. doi: 10.1094/MPMI-04-14-0100-R.

PMID:
25014591
3.

DNA-encoded nucleosome occupancy is associated with transcription levels in the human malaria parasite Plasmodium falciparum.

Bunnik EM, Polishko A, Prudhomme J, Ponts N, Gill SS, Lonardi S, Le Roch KG.

BMC Genomics. 2014 May 8;15:347. doi: 10.1186/1471-2164-15-347.

4.

The bZIP transcription factor Fgap1 mediates oxidative stress response and trichothecene biosynthesis but not virulence in Fusarium graminearum.

Montibus M, Ducos C, Bonnin-Verdal MN, Bormann J, Ponts N, Richard-Forget F, Barreau C.

PLoS One. 2013 Dec 12;8(12):e83377. doi: 10.1371/journal.pone.0083377. eCollection 2013.

5.

Genome-wide mapping of DNA methylation in the human malaria parasite Plasmodium falciparum.

Ponts N, Fu L, Harris EY, Zhang J, Chung DW, Cervantes MC, Prudhomme J, Atanasova-Penichon V, Zehraoui E, Bunnik EM, Rodrigues EM, Lonardi S, Hicks GR, Wang Y, Le Roch KG.

Cell Host Microbe. 2013 Dec 11;14(6):696-706. doi: 10.1016/j.chom.2013.11.007.

6.

The multifunctional autophagy pathway in the human malaria parasite, Plasmodium falciparum.

Cervantes S, Bunnik EM, Saraf A, Conner CM, Escalante A, Sardiu ME, Ponts N, Prudhomme J, Florens L, Le Roch KG.

Autophagy. 2014 Jan;10(1):80-92. doi: 10.4161/auto.26743. Epub 2013 Nov 11.

7.

Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum.

Bunnik EM, Chung DW, Hamilton M, Ponts N, Saraf A, Prudhomme J, Florens L, Le Roch KG.

Genome Biol. 2013 Nov 22;14(11):R128. doi: 10.1186/gb-2013-14-11-r128.

8.

Coupling of transcriptional response to oxidative stress and secondary metabolism regulation in filamentous fungi.

Montibus M, Pinson-Gadais L, Richard-Forget F, Barreau C, Ponts N.

Crit Rev Microbiol. 2013 Sep 16. [Epub ahead of print]

PMID:
24041414
9.

An apicoplast localized ubiquitylation system is required for the import of nuclear-encoded plastid proteins.

Agrawal S, Chung DW, Ponts N, van Dooren GG, Prudhomme J, Brooks CF, Rodrigues EM, Tan JC, Ferdig MT, Striepen B, Le Roch KG.

PLoS Pathog. 2013;9(6):e1003426. doi: 10.1371/journal.ppat.1003426. Epub 2013 Jun 13.

10.

Characterization of the ubiquitylating components of the human malaria parasite's protein degradation pathway.

Chung DW, Ponts N, Prudhomme J, Rodrigues EM, Le Roch KG.

PLoS One. 2012;7(8):e43477. doi: 10.1371/journal.pone.0043477. Epub 2012 Aug 17.

11.

NORMAL: accurate nucleosome positioning using a modified Gaussian mixture model.

Polishko A, Ponts N, Le Roch KG, Lonardi S.

Bioinformatics. 2012 Jun 15;28(12):i242-9. doi: 10.1093/bioinformatics/bts206.

12.

Strand-specific RNA-seq applied to malaria samples.

Ponts N, Chung DW, Le Roch KG.

Methods Mol Biol. 2012;883:59-73. doi: 10.1007/978-1-61779-839-9_4.

13.

BRAT-BW: efficient and accurate mapping of bisulfite-treated reads.

Harris EY, Ponts N, Le Roch KG, Lonardi S.

Bioinformatics. 2012 Jul 1;28(13):1795-6. doi: 10.1093/bioinformatics/bts264. Epub 2012 May 3.

14.

Chromatin-driven de novo discovery of DNA binding motifs in the human malaria parasite.

Harris EY, Ponts N, Le Roch KG, Lonardi S.

BMC Genomics. 2011 Dec 13;12:601. doi: 10.1186/1471-2164-12-601.

15.

Exploratory analysis of genomic segmentations with Segtools.

Buske OJ, Hoffman MM, Ponts N, Le Roch KG, Noble WS.

BMC Bioinformatics. 2011 Oct 26;12:415. doi: 10.1186/1471-2105-12-415.

16.

Genomics and integrated systems biology in Plasmodium falciparum: a path to malaria control and eradication.

Le Roch KG, Chung DW, Ponts N.

Parasite Immunol. 2012 Feb-Mar;34(2-3):50-60. doi: 10.1111/j.1365-3024.2011.01340.x. Review.

17.

Unraveling the ubiquitome of the human malaria parasite.

Ponts N, Saraf A, Chung DW, Harris A, Prudhomme J, Washburn MP, Florens L, Le Roch KG.

J Biol Chem. 2011 Nov 18;286(46):40320-30. doi: 10.1074/jbc.M111.238790. Epub 2011 Sep 19.

18.

Cinnamic-derived acids significantly affect Fusarium graminearum growth and in vitro synthesis of type B trichothecenes.

Ponts N, Pinson-Gadais L, Boutigny AL, Barreau C, Richard-Forget F.

Phytopathology. 2011 Aug;101(8):929-34. doi: 10.1094/PHYTO-09-10-0230.

19.

Nucleosome occupancy at transcription start sites in the human malaria parasite: a hard-wired evolution of virulence?

Ponts N, Harris EY, Lonardi S, Le Roch KG.

Infect Genet Evol. 2011 Jun;11(4):716-24. doi: 10.1016/j.meegid.2010.08.002. Epub 2010 Aug 11.

20.

Novel Gene Discovery in the Human Malaria Parasite using Nucleosome Positioning Data.

Pokhriyal N, Ponts N, Harris EY, Le Roch KG, Lonardi S.

Comput Syst Bioinformatics Conf. 2010 Aug;9:124-135.

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