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Identification of molecular signatures specific for distinct cranial sensory ganglia in the developing chick.

Patthey C, Clifford H, Haerty W, Ponting CP, Shimeld SM, Begbie J.

Neural Dev. 2016 Jan 27;11:3. doi: 10.1186/s13064-016-0057-y.


Vasohibins: new transglutaminase-like cysteine proteases possessing a non-canonical Cys-His-Ser catalytic triad.

Sanchez-Pulido L, Ponting CP.

Bioinformatics. 2016 May 15;32(10):1441-5. doi: 10.1093/bioinformatics/btv761. Epub 2016 Jan 21.


Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity.

Angermueller C, Clark SJ, Lee HJ, Macaulay IC, Teng MJ, Hu TX, Krueger F, Smallwood SA, Ponting CP, Voet T, Kelsey G, Stegle O, Reik W.

Nat Methods. 2016 Mar;13(3):229-32. doi: 10.1038/nmeth.3728. Epub 2016 Jan 11.


Assessing similarity to primary tissue and cortical layer identity in induced pluripotent stem cell-derived cortical neurons through single-cell transcriptomics.

Handel AE, Chintawar S, Lalic T, Whiteley E, Vowles J, Giustacchini A, Argoud K, Sopp P, Nakanishi M, Bowden R, Cowley S, Newey S, Akerman C, Ponting CP, Cader MZ.

Hum Mol Genet. 2016 Mar 1;25(5):989-1000. doi: 10.1093/hmg/ddv637. Epub 2016 Jan 5.


Dynamic spatio-temporal contribution of single β5t+ cortical epithelial precursors to the thymus medulla.

Mayer CE, Žuklys S, Zhanybekova S, Ohigashi I, Teh HY, Sansom SN, Shikama-Dorn N, Hafen K, Macaulay IC, Deadman ME, Ponting CP, Takahama Y, Holländer GA.

Eur J Immunol. 2016 Apr;46(4):846-56. doi: 10.1002/eji.201545995. Epub 2016 Jan 18.


Temporal transcriptomics suggest that twin-peaking genes reset the clock.

Pembroke WG, Babbs A, Davies KE, Ponting CP, Oliver PL.

Elife. 2015 Nov 2;4. pii: e10518. doi: 10.7554/eLife.10518.


REC-1 and HIM-5 distribute meiotic crossovers and function redundantly in meiotic double-strand break formation in Caenorhabditis elegans.

Chung G, Rose AM, Petalcorin MI, Martin JS, Kessler Z, Sanchez-Pulido L, Ponting CP, Yanowitz JL, Boulton SJ.

Genes Dev. 2015 Sep 15;29(18):1969-79. doi: 10.1101/gad.266056.115.


Corrigendum: Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells.

Tan JY, Sirey T, Honti F, Graham B, Piovesan A, Merkenschlager M, Webber C, Ponting CP, Marques AC.

Genome Res. 2015 Sep;25(9):1410.1. No abstract available.


Combined Single-Cell Functional and Gene Expression Analysis Resolves Heterogeneity within Stem Cell Populations.

Wilson NK, Kent DG, Buettner F, Shehata M, Macaulay IC, Calero-Nieto FJ, Sánchez Castillo M, Oedekoven CA, Diamanti E, Schulte R, Ponting CP, Voet T, Caldas C, Stingl J, Green AR, Theis FJ, Göttgens B.

Cell Stem Cell. 2015 Jun 4;16(6):712-24. doi: 10.1016/j.stem.2015.04.004. Epub 2015 May 21.


Microglia recapitulate a hematopoietic master regulator network in the aging human frontal cortex.

Wehrspaun CC, Haerty W, Ponting CP.

Neurobiol Aging. 2015 Aug;36(8):2443.e9-2443.e20. doi: 10.1016/j.neurobiolaging.2015.04.008. Epub 2015 Apr 25. Review.


CGAT: a model for immersive personalized training in computational genomics.

Sims D, Ponting CP, Heger A.

Brief Funct Genomics. 2016 Jan;15(1):32-7. doi: 10.1093/bfgp/elv021. Epub 2015 May 16. Review.


G&T-seq: parallel sequencing of single-cell genomes and transcriptomes.

Macaulay IC, Haerty W, Kumar P, Li YI, Hu TX, Teng MJ, Goolam M, Saurat N, Coupland P, Shirley LM, Smith M, Van der Aa N, Banerjee R, Ellis PD, Quail MA, Swerdlow HP, Zernicka-Goetz M, Livesey FJ, Ponting CP, Voet T.

Nat Methods. 2015 Jun;12(6):519-22. doi: 10.1038/nmeth.3370. Epub 2015 Apr 27.


Extensive microRNA-mediated crosstalk between lncRNAs and mRNAs in mouse embryonic stem cells.

Tan JY, Sirey T, Honti F, Graham B, Piovesan A, Merkenschlager M, Webber C, Ponting CP, Marques AC.

Genome Res. 2015 May;25(5):655-66. doi: 10.1101/gr.181974.114. Epub 2015 Mar 19. Erratum in: Genome Res. 2015 Sep;25(9):1410.1.


High incidence of unrecognized visceral/neurological late-onset Niemann-Pick disease, type C1, predicted by analysis of massively parallel sequencing data sets.

Wassif CA, Cross JL, Iben J, Sanchez-Pulido L, Cougnoux A, Platt FM, Ory DS, Ponting CP, Bailey-Wilson JE, Biesecker LG, Porter FD.

Genet Med. 2016 Jan;18(1):41-8. doi: 10.1038/gim.2015.25. Epub 2015 Mar 12.


Corrigendum: Cross-talking noncoding RNAs contribute to cell-specific neurodegeneration in SCA7.

Tan JY, Vance KW, Varela MA, Sirey T, Watson LM, Curtis HJ, Marinello M, Alves S, Steinkraus BR, Cooper S, Nesterova T, Brockdorff N, Fulga TA, Brice A, Sittler A, Oliver PL, Wood MJ, Ponting CP, Marques AC.

Nat Struct Mol Biol. 2015 Mar;22(3):272. doi: 10.1038/nsmb0315-272b. No abstract available.


Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment.

Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, Zhang Y, Lang Y, Xia J, He W, Shi Q, Subramanian S, Millar CD, Meader S, Rands CM, Fujita MK, Greenwold MJ, Castoe TA, Pollock DD, Gu W, Nam K, Ellegren H, Ho SY, Burt DW, Ponting CP, Jarvis ED, Gilbert MT, Yang H, Wang J, Lambert DM, Wang J, Zhang G.

Gigascience. 2014 Dec 12;3(1):27. doi: 10.1186/2047-217X-3-27. eCollection 2014.


TM6SF2 and MAC30, new enzyme homologs in sterol metabolism and common metabolic disease.

Sanchez-Pulido L, Ponting CP.

Front Genet. 2014 Dec 11;5:439. doi: 10.3389/fgene.2014.00439. eCollection 2014.


RBFOX and PTBP1 proteins regulate the alternative splicing of micro-exons in human brain transcripts.

Li YI, Sanchez-Pulido L, Haerty W, Ponting CP.

Genome Res. 2015 Jan;25(1):1-13. doi: 10.1101/gr.181990.114.


Identification of a candidate prognostic gene signature by transcriptome analysis of matched pre- and post-treatment prostatic biopsies from patients with advanced prostate cancer.

Rajan P, Stockley J, Sudbery IM, Fleming JT, Hedley A, Kalna G, Sims D, Ponting CP, Heger A, Robson CN, McMenemin RM, Pedley ID, Leung HY.

BMC Cancer. 2014 Dec 18;14:977. doi: 10.1186/1471-2407-14-977.

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