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Results: 1 to 20 of 132

1.

The human gut microbiome, a taxonomic conundrum.

Sankar SA, Lagier JC, Pontarotti P, Raoult D, Fournier PE.

Syst Appl Microbiol. 2015 Jun;38(4):276-286. doi: 10.1016/j.syapm.2015.03.004. Epub 2015 Mar 25. Review.

PMID:
25864640
2.

The red coral (Corallium rubrum) transcriptome: a new resource for population genetics and local adaptation studies.

Pratlong M, Haguenauer A, Chabrol O, Klopp C, Pontarotti P, Aurelle D.

Mol Ecol Resour. 2015 Feb 4. doi: 10.1111/1755-0998.12383. [Epub ahead of print]

PMID:
25648864
3.

Decelerated genome evolution in modern vertebrates revealed by analysis of multiple lancelet genomes.

Huang S, Chen Z, Yan X, Yu T, Huang G, Yan Q, Pontarotti PA, Zhao H, Li J, Yang P, Wang R, Li R, Tao X, Deng T, Wang Y, Li G, Zhang Q, Zhou S, You L, Yuan S, Fu Y, Wu F, Dong M, Chen S, Xu A.

Nat Commun. 2014 Dec 19;5:5896. doi: 10.1038/ncomms6896.

4.

African relapsing Fever borreliae genomospecies revealed by comparative genomics.

Elbir H, Abi-Rached L, Pontarotti P, Yoosuf N, Drancourt M.

Front Public Health. 2014 May 14;2:43. doi: 10.3389/fpubh.2014.00043. eCollection 2014.

5.

Mycobacteriophage-drived diversification of Mycobacterium abscessus.

Sassi M, Gouret P, Chabrol O, Pontarotti P, Drancourt M.

Biol Direct. 2014 Sep 15;9:19. doi: 10.1186/1745-6150-9-19.

6.

The proto-MHC of placozoans, a region specialized in cellular stress and ubiquitination/proteasome pathways.

Suurväli J, Jouneau L, Thépot D, Grusea S, Pontarotti P, Du Pasquier L, Rüütel Boudinot S, Boudinot P.

J Immunol. 2014 Sep 15;193(6):2891-901. doi: 10.4049/jimmunol.1401177. Epub 2014 Aug 11.

PMID:
25114105
7.

The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.

Levasseur A, Lomascolo A, Chabrol O, Ruiz-Dueñas FJ, Boukhris-Uzan E, Piumi F, Kües U, Ram AF, Murat C, Haon M, Benoit I, Arfi Y, Chevret D, Drula E, Kwon MJ, Gouret P, Lesage-Meessen L, Lombard V, Mariette J, Noirot C, Park J, Patyshakuliyeva A, Sigoillot JC, Wiebenga A, Wösten HA, Martin F, Coutinho PM, de Vries RP, Martínez AT, Klopp C, Pontarotti P, Henrissat B, Record E.

BMC Genomics. 2014 Jun 18;15:486. doi: 10.1186/1471-2164-15-486.

8.

DNA-dependent RNA polymerase detects hidden giant viruses in published databanks.

Sharma V, Colson P, Giorgi R, Pontarotti P, Raoult D.

Genome Biol Evol. 2014 Jun 13;6(7):1603-10. doi: 10.1093/gbe/evu128.

9.

Methods to study the occurrence and the evolution of pseudogenes through a phylogenetic approach.

Dainat J, Pontarotti P.

Methods Mol Biol. 2014;1167:87-99. doi: 10.1007/978-1-4939-0835-6_7.

PMID:
24823773
10.

Alphaproteobacteria species as a source and target of lateral sequence transfers.

Le PT, Pontarotti P, Raoult D.

Trends Microbiol. 2014 Mar;22(3):147-56. doi: 10.1016/j.tim.2013.12.006. Epub 2014 Jan 21. Review.

PMID:
24461455
11.

To tree or not to tree? Genome-wide quantification of recombination and reticulate evolution during the diversification of strict intracellular bacteria.

Hernández-López A, Chabrol O, Royer-Carenzi M, Merhej V, Pontarotti P, Raoult D.

Genome Biol Evol. 2013;5(12):2305-17. doi: 10.1093/gbe/evt178.

12.

Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga.

Flot JF, Hespeels B, Li X, Noel B, Arkhipova I, Danchin EG, Hejnol A, Henrissat B, Koszul R, Aury JM, Barbe V, Barthélémy RM, Bast J, Bazykin GA, Chabrol O, Couloux A, Da Rocha M, Da Silva C, Gladyshev E, Gouret P, Hallatschek O, Hecox-Lea B, Labadie K, Lejeune B, Piskurek O, Poulain J, Rodriguez F, Ryan JF, Vakhrusheva OA, Wajnberg E, Wirth B, Yushenova I, Kellis M, Kondrashov AS, Mark Welch DB, Pontarotti P, Weissenbach J, Wincker P, Jaillon O, Van Doninck K.

Nature. 2013 Aug 22;500(7463):453-7. doi: 10.1038/nature12326. Epub 2013 Jul 21.

PMID:
23873043
13.

Choosing the best ancestral character state reconstruction method.

Royer-Carenzi M, Pontarotti P, Didier G.

Math Biosci. 2013 Mar;242(1):95-109. doi: 10.1016/j.mbs.2012.12.003. Epub 2012 Dec 28.

PMID:
23276531
14.

Peptidoglycan: a post-genomic analysis.

Cayrou C, Henrissat B, Gouret P, Pontarotti P, Drancourt M.

BMC Microbiol. 2012 Dec 18;12:294. doi: 10.1186/1471-2180-12-294. Erratum in: BMC Microbiol. 2014;14:123.

15.

An automated approach for the identification of horizontal gene transfers from complete genomes reveals the rhizome of Rickettsiales.

Le PT, Ramulu HG, Guijarro L, Paganini J, Gouret P, Chabrol O, Raoult D, Pontarotti P.

BMC Evol Biol. 2012 Dec 12;12:243. doi: 10.1186/1471-2148-12-243.

16.

Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes.

Paganini J, Campan-Fournier A, Da Rocha M, Gouret P, Pontarotti P, Wajnberg E, Abad P, Danchin EG.

PLoS One. 2012;7(11):e50875. doi: 10.1371/journal.pone.0050875. Epub 2012 Nov 30.

17.

Oocyte-somatic cells interactions, lessons from evolution.

Charlier C, Montfort J, Chabrol O, Brisard D, Nguyen T, Le Cam A, Richard-Parpaillon L, Moreews F, Pontarotti P, Uzbekova S, Chesnel F, Bobe J.

BMC Genomics. 2012 Oct 19;13:560. doi: 10.1186/1471-2164-13-560.

18.

The butyrophilin (BTN) gene family: from milk fat to the regulation of the immune response.

Afrache H, Gouret P, Ainouche S, Pontarotti P, Olive D.

Immunogenetics. 2012 Nov;64(11):781-94. doi: 10.1007/s00251-012-0619-z. Epub 2012 Sep 23. Review.

PMID:
23000944
19.

The rhizome of life: what about metazoa?

Ramulu HG, Raoult D, Pontarotti P.

Front Cell Infect Microbiol. 2012 Apr 11;2:50. doi: 10.3389/fcimb.2012.00050. eCollection 2012. Review.

20.

The chordate proteome history database.

Levasseur A, Paganini J, Dainat J, Thompson JD, Poch O, Pontarotti P, Gouret P.

Evol Bioinform Online. 2012;8:437-47. doi: 10.4137/EBO.S9186. Epub 2012 Aug 1.

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