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Items: 11

1.

Fine-mapping and identification of a candidate gene underlying the d2 dwarfing phenotype in pearl millet, Cenchrus americanus (L.) Morrone.

Parvathaneni RK, Jakkula V, Padi FK, Faure S, Nagarajappa N, Pontaroli AC, Wu X, Bennetzen JL, Devos KM.

G3 (Bethesda). 2013 Mar;3(3):563-72. doi: 10.1534/g3.113.005587. Epub 2013 Mar 1.

2.

Reference genome sequence of the model plant Setaria.

Bennetzen JL, Schmutz J, Wang H, Percifield R, Hawkins J, Pontaroli AC, Estep M, Feng L, Vaughn JN, Grimwood J, Jenkins J, Barry K, Lindquist E, Hellsten U, Deshpande S, Wang X, Wu X, Mitros T, Triplett J, Yang X, Ye CY, Mauro-Herrera M, Wang L, Li P, Sharma M, Sharma R, Ronald PC, Panaud O, Kellogg EA, Brutnell TP, Doust AN, Tuskan GA, Rokhsar D, Devos KM.

Nat Biotechnol. 2012 May 13;30(6):555-61. doi: 10.1038/nbt.2196.

PMID:
22580951
3.

De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera).

Al-Dous EK, George B, Al-Mahmoud ME, Al-Jaber MY, Wang H, Salameh YM, Al-Azwani EK, Chaluvadi S, Pontaroli AC, DeBarry J, Arondel V, Ohlrogge J, Saie IJ, Suliman-Elmeer KM, Bennetzen JL, Kruegger RR, Malek JA.

Nat Biotechnol. 2011 May 29;29(6):521-7. doi: 10.1038/nbt.1860.

PMID:
21623354
4.

Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza.

Ammiraju JS, Fan C, Yu Y, Song X, Cranston KA, Pontaroli AC, Lu F, Sanyal A, Jiang N, Rambo T, Currie J, Collura K, Talag J, Bennetzen JL, Chen M, Jackson S, Wing RA.

Plant J. 2010 Aug;63(3):430-42. doi: 10.1111/j.1365-313X.2010.04251.x. Epub 2010 May 6.

PMID:
20487382
5.

An examination of targeted gene neighborhoods in strawberry.

Davis TM, Shields ME, Zhang Q, Tombolato-Terzińá D, Bennetzen JL, Pontaroli AC, Wang H, Yao Q, SanMiguel P, Folta KM.

BMC Plant Biol. 2010 May 4;10:81. doi: 10.1186/1471-2229-10-81.

6.

Dynamic evolution of oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set.

Ammiraju JS, Lu F, Sanyal A, Yu Y, Song X, Jiang N, Pontaroli AC, Rambo T, Currie J, Collura K, Talag J, Fan C, Goicoechea JL, Zuccolo A, Chen J, Bennetzen JL, Chen M, Jackson S, Wing RA.

Plant Cell. 2008 Dec;20(12):3191-209. doi: 10.1105/tpc.108.063727. Epub 2008 Dec 19.

7.

Geographical distribution and diversity of bacteria associated with natural populations of Drosophila melanogaster.

Corby-Harris V, Pontaroli AC, Shimkets LJ, Bennetzen JL, Habel KE, Promislow DE.

Appl Environ Microbiol. 2007 Jun;73(11):3470-9. Epub 2007 Mar 30.

8.

Uneven chromosome contraction and expansion in the maize genome.

Bruggmann R, Bharti AK, Gundlach H, Lai J, Young S, Pontaroli AC, Wei F, Haberer G, Fuks G, Du C, Raymond C, Estep MC, Liu R, Bennetzen JL, Chan AP, Rabinowicz PD, Quackenbush J, Barbazuk WB, Wing RA, Birren B, Nusbaum C, Rounsley S, Mayer KF, Messing J.

Genome Res. 2006 Oct;16(10):1241-51. Epub 2006 Aug 10.

9.

Plant regeneration after long-term callus culture in clones of Asparagus officinalis L.

Pontaroli AC, Camadro EL.

Biocell. 2005 Dec;29(3):313-7.

PMID:
16524253
10.

The TIGR Maize Database.

Chan AP, Pertea G, Cheung F, Lee D, Zheng L, Whitelaw C, Pontaroli AC, SanMiguel P, Yuan Y, Bennetzen J, Barbazuk WB, Quackenbush J, Rabinowicz PD.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D771-6.

11.

Analysis and mapping of randomly chosen bacterial artificial chromosome clones from hexaploid bread wheat.

Devos KM, Ma J, Pontaroli AC, Pratt LH, Bennetzen JL.

Proc Natl Acad Sci U S A. 2005 Dec 27;102(52):19243-8. Epub 2005 Dec 15.

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