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Results: 1 to 20 of 58

1.

Exploring the genesis and functions of Human Accelerated Regions sheds light on their role in human evolution.

Hubisz MJ, Pollard KS.

Curr Opin Genet Dev. 2014 Aug 22;29C:15-21. doi: 10.1016/j.gde.2014.07.005. [Epub ahead of print] Review.

PMID:
25156517
[PubMed - as supplied by publisher]
2.

Profile Hidden Markov Models for the Detection of Viruses within Metagenomic Sequence Data.

Skewes-Cox P, Sharpton TJ, Pollard KS, DeRisi JL.

PLoS One. 2014 Aug 20;9(8):e105067. doi: 10.1371/journal.pone.0105067. eCollection 2014.

PMID:
25140992
[PubMed - in process]
Free PMC Article
3.

Integrating diverse datasets improves developmental enhancer prediction.

Erwin GD, Oksenberg N, Truty RM, Kostka D, Murphy KK, Ahituv N, Pollard KS, Capra JA.

PLoS Comput Biol. 2014 Jun 26;10(6):e1003677. doi: 10.1371/journal.pcbi.1003677. eCollection 2014 Jun.

PMID:
24967590
[PubMed - in process]
Free PMC Article
4.

Liquefaction of Semen Generates and Later Degrades a Conserved Semenogelin Peptide That Enhances HIV Infection.

Roan NR, Liu H, Usmani SM, Neidleman J, Müller JA, Avila-Herrera A, Gawanbacht A, Zirafi O, Chu S, Dong M, Kumar ST, Smith JF, Pollard KS, Fändrich M, Kirchhoff F, Münch J, Witkowska HE, Greene WC.

J Virol. 2014 Jul 1;88(13):7221-34. doi: 10.1128/JVI.00269-14. Epub 2014 Apr 16.

PMID:
24741080
[PubMed - in process]
5.

Exome capture from saliva produces high quality genomic and metagenomic data.

Kidd JM, Sharpton TJ, Bobo D, Norman PJ, Martin AR, Carpenter ML, Sikora M, Gignoux CR, Nemat-Gorgani N, Adams A, Guadalupe M, Guo X, Feng Q, Li Y, Liu X, Parham P, Hoal EG, Feldman MW, Pollard KS, Wall JD, Bustamante CD, Henn BM.

BMC Genomics. 2014 Apr 4;15:262. doi: 10.1186/1471-2164-15-262.

PMID:
24708091
[PubMed - in process]
Free PMC Article
6.

A taxonomic signature of obesity in the microbiome? Getting to the guts of the matter.

Finucane MM, Sharpton TJ, Laurent TJ, Pollard KS.

PLoS One. 2014 Jan 8;9(1):e84689. doi: 10.1371/journal.pone.0084689. eCollection 2014.

PMID:
24416266
[PubMed - in process]
Free PMC Article
7.

Many human accelerated regions are developmental enhancers.

Capra JA, Erwin GD, McKinsey G, Rubenstein JL, Pollard KS.

Philos Trans R Soc Lond B Biol Sci. 2013 Nov 11;368(1632):20130025. doi: 10.1098/rstb.2013.0025. Print 2013 Dec 19.

PMID:
24218637
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Acetylation of RNA polymerase II regulates growth-factor-induced gene transcription in mammalian cells.

Schröder S, Herker E, Itzen F, He D, Thomas S, Gilchrist DA, Kaehlcke K, Cho S, Pollard KS, Capra JA, Schnölzer M, Cole PA, Geyer M, Bruneau BG, Adelman K, Ott M.

Mol Cell. 2013 Nov 7;52(3):314-24. doi: 10.1016/j.molcel.2013.10.009.

PMID:
24207025
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Reconstructing the microbial diversity and function of pre-agricultural tallgrass prairie soils in the United States.

Fierer N, Ladau J, Clemente JC, Leff JW, Owens SM, Pollard KS, Knight R, Gilbert JA, McCulley RL.

Science. 2013 Nov 1;342(6158):621-4. doi: 10.1126/science.1243768.

PMID:
24179225
[PubMed - indexed for MEDLINE]
10.

From genes to milk: genomic organization and epigenetic regulation of the mammary transcriptome.

Lemay DG, Pollard KS, Martin WF, Freeman Zadrowski C, Hernandez J, Korf I, German JB, Rijnkels M.

PLoS One. 2013 Sep 26;8(9):e75030. doi: 10.1371/journal.pone.0075030. eCollection 2013.

PMID:
24086428
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A model-based analysis of GC-biased gene conversion in the human and chimpanzee genomes.

Capra JA, Hubisz MJ, Kostka D, Pollard KS, Siepel A.

PLoS Genet. 2013;9(8):e1003684. doi: 10.1371/journal.pgen.1003684. Epub 2013 Aug 15.

PMID:
23966869
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

How old is my gene?

Capra JA, Stolzer M, Durand D, Pollard KS.

Trends Genet. 2013 Nov;29(11):659-68. doi: 10.1016/j.tig.2013.07.001. Epub 2013 Aug 1. Review.

PMID:
23915718
[PubMed - indexed for MEDLINE]
13.

A compact, in vivo screen of all 6-mers reveals drivers of tissue-specific expression and guides synthetic regulatory element design.

Smith RP, Riesenfeld SJ, Holloway AK, Li Q, Murphy KK, Feliciano NM, Orecchia L, Oksenberg N, Pollard KS, Ahituv N.

Genome Biol. 2013 Jul 18;14(7):R72. doi: 10.1186/gb-2013-14-7-r72.

PMID:
23867016
[PubMed - in process]
Free PMC Article
14.

Beyond classification: gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis.

Riesenfeld SJ, Pollard KS.

BMC Genomics. 2013 Jun 22;14:419. doi: 10.1186/1471-2164-14-419.

PMID:
23799973
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Global marine bacterial diversity peaks at high latitudes in winter.

Ladau J, Sharpton TJ, Finucane MM, Jospin G, Kembel SW, O'Dwyer J, Koeppel AF, Green JL, Pollard KS.

ISME J. 2013 Sep;7(9):1669-77. doi: 10.1038/ismej.2013.37. Epub 2013 Mar 21. Erratum in: ISME J.2013 Sep;7(9)1876.

PMID:
23514781
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource.

Sharpton TJ, Jospin G, Wu D, Langille MG, Pollard KS, Eisen JA.

BMC Bioinformatics. 2012 Oct 13;13:264. doi: 10.1186/1471-2105-13-264.

PMID:
23061897
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes.

Lemay DG, Martin WF, Hinrichs AS, Rijnkels M, German JB, Korf I, Pollard KS.

BMC Bioinformatics. 2012 Sep 28;13:253. doi: 10.1186/1471-2105-13-253.

PMID:
23020263
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage.

Wamstad JA, Alexander JM, Truty RM, Shrikumar A, Li F, Eilertson KE, Ding H, Wylie JN, Pico AR, Capra JA, Erwin G, Kattman SJ, Keller GM, Srivastava D, Levine SS, Pollard KS, Holloway AK, Boyer LA, Bruneau BG.

Cell. 2012 Sep 28;151(1):206-20. doi: 10.1016/j.cell.2012.07.035. Epub 2012 Sep 12.

PMID:
22981692
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

ProteinHistorian: tools for the comparative analysis of eukaryote protein origin.

Capra JA, Williams AG, Pollard KS.

PLoS Comput Biol. 2012;8(6):e1002567. doi: 10.1371/journal.pcbi.1002567. Epub 2012 Jun 28.

PMID:
22761559
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Novel bacterial taxa in the human microbiome.

Wylie KM, Truty RM, Sharpton TJ, Mihindukulasuriya KA, Zhou Y, Gao H, Sodergren E, Weinstock GM, Pollard KS.

PLoS One. 2012;7(6):e35294. doi: 10.1371/journal.pone.0035294. Epub 2012 Jun 13.

PMID:
22719826
[PubMed - indexed for MEDLINE]
Free PMC Article

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