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Items: 1 to 20 of 84

1.

Urban greenness influences airborne bacterial community composition.

Mhuireach G, Johnson BR, Altrichter AE, Ladau J, Meadow JF, Pollard KS, Green JL.

Sci Total Environ. 2016 Jul 11. pii: S0048-9697(16)31482-6. doi: 10.1016/j.scitotenv.2016.07.037. [Epub ahead of print]

2.

Toward a Predictive Understanding of Earth's Microbiomes to Address 21st Century Challenges.

Blaser MJ, Cardon ZG, Cho MK, Dangl JL, Donohue TJ, Green JL, Knight R, Maxon ME, Northen TR, Pollard KS, Brodie EL.

MBio. 2016 May 13;7(3). pii: e00714-16. doi: 10.1128/mBio.00714-16.

3.

Features that define the best ChIP-seq peak calling algorithms.

Thomas R, Thomas S, Holloway AK, Pollard KS.

Brief Bioinform. 2016 May 11. pii: bbw035. [Epub ahead of print]

PMID:
27169896
4.

Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin.

Whalen S, Truty RM, Pollard KS.

Nat Genet. 2016 May;48(5):488-96. doi: 10.1038/ng.3539. Epub 2016 Apr 4.

5.

Transcriptomic and epigenomic characterization of the developing bat wing.

Eckalbar WL, Schlebusch SA, Mason MK, Gill Z, Parker AV, Booker BM, Nishizaki S, Muswamba-Nday C, Terhune E, Nevonen KA, Makki N, Friedrich T, VanderMeer JE, Pollard KS, Carbone L, Wall JD, Illing N, Ahituv N.

Nat Genet. 2016 May;48(5):528-36. doi: 10.1038/ng.3537. Epub 2016 Mar 28.

PMID:
27019111
6.

Bat Accelerated Regions Identify a Bat Forelimb Specific Enhancer in the HoxD Locus.

Booker BM, Friedrich T, Mason MK, VanderMeer JE, Zhao J, Eckalbar WL, Logan M, Illing N, Pollard KS, Ahituv N.

PLoS Genet. 2016 Mar 28;12(3):e1005738. doi: 10.1371/journal.pgen.1005738. eCollection 2016 Mar.

7.

Complex Interdependence Regulates Heterotypic Transcription Factor Distribution and Coordinates Cardiogenesis.

Luna-Zurita L, Stirnimann CU, Glatt S, Kaynak BL, Thomas S, Baudin F, Samee MA, He D, Small EM, Mileikovsky M, Nagy A, Holloway AK, Pollard KS, Müller CW, Bruneau BG.

Cell. 2016 Feb 25;164(5):999-1014. doi: 10.1016/j.cell.2016.01.004. Epub 2016 Feb 11.

PMID:
26875865
8.

Joint mouse-human phenome-wide association to test gene function and disease risk.

Wang X, Pandey AK, Mulligan MK, Williams EG, Mozhui K, Li Z, Jovaisaite V, Quarles LD, Xiao Z, Huang J, Capra JA, Chen Z, Taylor WL, Bastarache L, Niu X, Pollard KS, Ciobanu DC, Reznik AO, Tishkov AV, Zhulin IB, Peng J, Nelson SF, Denny JC, Auwerx J, Lu L, Williams RW.

Nat Commun. 2016 Feb 2;7:10464. doi: 10.1038/ncomms10464.

9.

Accelerated Evolution of Enhancer Hotspots in the Mammal Ancestor.

Holloway AK, Bruneau BG, Sukonnik T, Rubenstein JL, Pollard KS.

Mol Biol Evol. 2016 Apr;33(4):1008-18. doi: 10.1093/molbev/msv344. Epub 2015 Dec 29.

10.
11.

Automated and Accurate Estimation of Gene Family Abundance from Shotgun Metagenomes.

Nayfach S, Bradley PH, Wyman SK, Laurent TJ, Williams A, Eisen JA, Pollard KS, Sharpton TJ.

PLoS Comput Biol. 2015 Nov 13;11(11):e1004573. doi: 10.1371/journal.pcbi.1004573. eCollection 2015 Nov.

12.

MICROBIOME. A unified initiative to harness Earth's microbiomes.

Alivisatos AP, Blaser MJ, Brodie EL, Chun M, Dangl JL, Donohue TJ, Dorrestein PC, Gilbert JA, Green JL, Jansson JK, Knight R, Maxon ME, McFall-Ngai MJ, Miller JF, Pollard KS, Ruby EG, Taha SA; Unified Microbiome Initiative Consortium.

Science. 2015 Oct 30;350(6260):507-8. doi: 10.1126/science.aac8480. Epub 2015 Oct 28. No abstract available.

PMID:
26511287
13.

Genomic approaches to studying human-specific developmental traits.

Franchini LF, Pollard KS.

Development. 2015 Sep 15;142(18):3100-12. doi: 10.1242/dev.120048. Review.

14.

Disruptions in a cluster of computationally identified enhancers near FOXC1 and GMDS may influence brain development.

Haliburton GD, McKinsey GL, Pollard KS.

Neurogenetics. 2016 Jan;17(1):1-9. doi: 10.1007/s10048-015-0458-9. Epub 2015 Sep 17.

15.

Can a few non-coding mutations make a human brain?

Franchini LF, Pollard KS.

Bioessays. 2015 Oct;37(10):1054-61. doi: 10.1002/bies.201500049. Epub 2015 Aug 25.

PMID:
26350501
16.
17.

MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome.

Nayfach S, Fischbach MA, Pollard KS.

Bioinformatics. 2015 Oct 15;31(20):3368-70. doi: 10.1093/bioinformatics/btv382. Epub 2015 Jun 22.

18.

Marked seasonal variation in the wild mouse gut microbiota.

Maurice CF, Knowles SC, Ladau J, Pollard KS, Fenton A, Pedersen AB, Turnbaugh PJ.

ISME J. 2015 Nov;9(11):2423-34. doi: 10.1038/ismej.2015.53. Epub 2015 May 29.

19.

Signatures of accelerated somatic evolution in gene promoters in multiple cancer types.

Smith KS, Yadav VK, Pedersen BS, Shaknovich R, Geraci MW, Pollard KS, De S.

Nucleic Acids Res. 2015 Jun 23;43(11):5307-17. doi: 10.1093/nar/gkv419. Epub 2015 May 1.

20.

Continental-scale distributions of dust-associated bacteria and fungi.

Barberán A, Ladau J, Leff JW, Pollard KS, Menninger HL, Dunn RR, Fierer N.

Proc Natl Acad Sci U S A. 2015 May 5;112(18):5756-61. doi: 10.1073/pnas.1420815112. Epub 2015 Apr 20.

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