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Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans.

Gibb GC, Condamine FL, Kuch M, Enk J, Moraes-Barros N, Superina M, Poinar HN, Delsuc F.

Mol Biol Evol. 2015 Nov 9. pii: msv250. [Epub ahead of print]


Correction to 'Ancient DNA and the tropics: a rodent's tale'.

Gutiérrez-García TA, Vázquez-Domínguez E, Arroyo-Cabrales J, Kuch M, Enk J, King C, Poinar HN.

Biol Lett. 2015 Mar;11(3). pii: 20150111. doi: 10.1098/rsbl.2015.0111.


Ancient human genomics: the methodology behind reconstructing evolutionary pathways.

Marciniak S, Klunk J, Devault A, Enk J, Poinar HN.

J Hum Evol. 2015 Feb;79:21-34. doi: 10.1016/j.jhevol.2014.11.003. Epub 2015 Jan 15.


Ancient DNA and the tropics: a rodent's tale.

Gutiérrez-García TA, Vázquez-Domínguez E, Arroyo-Cabrales J, Kuch M, Enk J, King C, Poinar HN.

Biol Lett. 2014 Jun;10(6). pii: 20140224. doi: 10.1098/rsbl.2014.0224. Erratum in: Biol Lett. 2015 Mar;11(3). pii: 20150111. doi: 10.1098/rsbl.2015.0111.


Ancient pathogen DNA in archaeological samples detected with a Microbial Detection Array.

Devault AM, McLoughlin K, Jaing C, Gardner S, Porter TM, Enk JM, Thissen J, Allen J, Borucki M, DeWitte SN, Dhody AN, Poinar HN.

Sci Rep. 2014 Mar 6;4:4245. doi: 10.1038/srep04245.


Ancient whole genome enrichment using baits built from modern DNA.

Enk JM, Devault AM, Kuch M, Murgha YE, Rouillard JM, Poinar HN.

Mol Biol Evol. 2014 May;31(5):1292-4. doi: 10.1093/molbev/msu074. Epub 2014 Feb 13.


Second-pandemic strain of Vibrio cholerae from the Philadelphia cholera outbreak of 1849.

Devault AM, Golding GB, Waglechner N, Enk JM, Kuch M, Tien JH, Shi M, Fisman DN, Dhody AN, Forrest S, Bos KI, Earn DJ, Holmes EC, Poinar HN.

N Engl J Med. 2014 Jan 23;370(4):334-40. doi: 10.1056/NEJMoa1308663. Epub 2014 Jan 8.


Amplicon pyrosequencing late Pleistocene permafrost: the removal of putative contaminant sequences and small-scale reproducibility.

Porter TM, Golding GB, King C, Froese D, Zazula G, Poinar HN.

Mol Ecol Resour. 2013 Sep;13(5):798-810. doi: 10.1111/1755-0998.12124. Epub 2013 May 20.


Yersinia pestis: new evidence for an old infection.

Bos KI, Stevens P, Nieselt K, Poinar HN, Dewitte SN, Krause J.

PLoS One. 2012;7(11):e49803. doi: 10.1371/journal.pone.0049803. Epub 2012 Nov 28.


Case study: ancient sloth DNA recovered from hairs preserved in paleofeces.

Clack AA, Macphee RD, Poinar HN.

Methods Mol Biol. 2012;840:51-6. doi: 10.1007/978-1-61779-516-9_7.


A draft genome of Yersinia pestis from victims of the Black Death.

Bos KI, Schuenemann VJ, Golding GB, Burbano HA, Waglechner N, Coombes BK, McPhee JB, DeWitte SN, Meyer M, Schmedes S, Wood J, Earn DJ, Herring DA, Bauer P, Poinar HN, Krause J.

Nature. 2011 Oct 12;478(7370):506-10. doi: 10.1038/nature10549. Erratum in: Nature. 2011 Dec 8;480(7376):278.


Antibiotic resistance is ancient.

D'Costa VM, King CE, Kalan L, Morar M, Sung WW, Schwarz C, Froese D, Zazula G, Calmels F, Debruyne R, Golding GB, Poinar HN, Wright GD.

Nature. 2011 Aug 31;477(7365):457-61. doi: 10.1038/nature10388.


Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death.

Schuenemann VJ, Bos K, DeWitte S, Schmedes S, Jamieson J, Mittnik A, Forrest S, Coombes BK, Wood JW, Earn DJ, White W, Krause J, Poinar HN.

Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):E746-52. doi: 10.1073/pnas.1105107108. Epub 2011 Aug 29.


Mylodon darwinii DNA sequences from ancient fecal hair shafts.

Clack AA, MacPhee RD, Poinar HN.

Ann Anat. 2012 Jan 20;194(1):26-30. doi: 10.1016/j.aanat.2011.05.001. Epub 2011 May 17. Review.


Ancient DNA from lake sediments: bridging the gap between paleoecology and genetics.

Anderson-Carpenter LL, McLachlan JS, Jackson ST, Kuch M, Lumibao CY, Poinar HN.

BMC Evol Biol. 2011 Jan 27;11:30. doi: 10.1186/1471-2148-11-30.


Herald waves of cholera in nineteenth century London.

Tien JH, Poinar HN, Fisman DN, Earn DJ.

J R Soc Interface. 2011 May 6;8(58):756-60. doi: 10.1098/rsif.2010.0494. Epub 2010 Dec 1.


Quantitative assessment of the sensitivity of various commercial reverse transcriptases based on armored HIV RNA.

Okello JB, Rodriguez L, Poinar D, Bos K, Okwi AL, Bimenya GS, Sewankambo NK, Henry KR, Kuch M, Poinar HN.

PLoS One. 2010 Nov 10;5(11):e13931. doi: 10.1371/journal.pone.0013931.


Time dependency of molecular rates in ancient DNA data sets, a sampling artifact?

Debruyne R, Poinar HN.

Syst Biol. 2009 Jun;58(3):348-60. doi: 10.1093/sysbio/syp028. Epub 2009 Jul 1. No abstract available.


Comparison of methods in the recovery of nucleic acids from archival formalin-fixed paraffin-embedded autopsy tissues.

Okello JB, Zurek J, Devault AM, Kuch M, Okwi AL, Sewankambo NK, Bimenya GS, Poinar D, Poinar HN.

Anal Biochem. 2010 May 1;400(1):110-7. doi: 10.1016/j.ab.2010.01.014. Epub 2010 Jan 15.


Out of America: ancient DNA evidence for a new world origin of late quaternary woolly mammoths.

Debruyne R, Chu G, King CE, Bos K, Kuch M, Schwarz C, Szpak P, Gröcke DR, Matheus P, Zazula G, Guthrie D, Froese D, Buigues B, de Marliave C, Flemming C, Poinar D, Fisher D, Southon J, Tikhonov AN, MacPhee RD, Poinar HN.

Curr Biol. 2008 Sep 9;18(17):1320-6. doi: 10.1016/j.cub.2008.07.061.

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