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Results: 1 to 20 of 61

1.

Life on the edge: functional genomic response of Ignicoccus hospitalis to the presence of Nanoarchaeum equitans.

Giannone RJ, Wurch LL, Heimerl T, Martin S, Yang Z, Huber H, Rachel R, Hettich RL, Podar M.

ISME J. 2014 Jul 11. doi: 10.1038/ismej.2014.112. [Epub ahead of print]

PMID:
25012904
[PubMed - as supplied by publisher]
2.

Diversity and genomic insights into the uncultured Chloroflexi from the human microbiota.

Campbell AG, Schwientek P, Vishnivetskaya T, Woyke T, Levy S, Beall CJ, Griffen A, Leys E, Podar M.

Environ Microbiol. 2014 Sep;16(9):2635-43. doi: 10.1111/1462-2920.12461. Epub 2014 Apr 17.

PMID:
24738594
[PubMed - in process]
3.

Single cell genomics of uncultured, health-associated Tannerella BU063 (Oral Taxon 286) and comparison to the closely related pathogen Tannerella forsythia.

Beall CJ, Campbell AG, Dayeh DM, Griffen AL, Podar M, Leys EJ.

PLoS One. 2014 Feb 14;9(2):e89398. doi: 10.1371/journal.pone.0089398. eCollection 2014.

PMID:
24551246
[PubMed - in process]
Free PMC Article
4.

Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities.

Somenahally AC, Mosher JJ, Yuan T, Podar M, Phelps TJ, Brown SD, Yang ZK, Hazen TC, Arkin AP, Palumbo AV, Van Nostrand JD, Zhou J, Elias DA.

PLoS One. 2013 Dec 23;8(12):e83909. doi: 10.1371/journal.pone.0083909. eCollection 2013.

PMID:
24376771
[PubMed - in process]
Free PMC Article
5.

A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees.

Shakya M, Gottel N, Castro H, Yang ZK, Gunter L, Labbé J, Muchero W, Bonito G, Vilgalys R, Tuskan G, Podar M, Schadt CW.

PLoS One. 2013 Oct 16;8(10):e76382. doi: 10.1371/journal.pone.0076382. eCollection 2013.

PMID:
24146861
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Mercury methylation by novel microorganisms from new environments.

Gilmour CC, Podar M, Bullock AL, Graham AM, Brown SD, Somenahally AC, Johs A, Hurt RA Jr, Bailey KL, Elias DA.

Environ Sci Technol. 2013 Oct 15;47(20):11810-20. doi: 10.1021/es403075t. Epub 2013 Sep 26.

PMID:
24024607
[PubMed - indexed for MEDLINE]
7.

Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park.

Podar M, Makarova KS, Graham DE, Wolf YI, Koonin EV, Reysenbach AL.

Biol Direct. 2013 Apr 22;8:9. doi: 10.1186/1745-6150-8-9.

PMID:
23607440
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Multiple single-cell genomes provide insight into functions of uncultured Deltaproteobacteria in the human oral cavity.

Campbell AG, Campbell JH, Schwientek P, Woyke T, Sczyrba A, Allman S, Beall CJ, Griffen A, Leys E, Podar M.

PLoS One. 2013;8(3):e59361. doi: 10.1371/journal.pone.0059361. Epub 2013 Mar 26.

PMID:
23555659
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

UGA is an additional glycine codon in uncultured SR1 bacteria from the human microbiota.

Campbell JH, O'Donoghue P, Campbell AG, Schwientek P, Sczyrba A, Woyke T, Söll D, Podar M.

Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5540-5. doi: 10.1073/pnas.1303090110. Epub 2013 Mar 18.

PMID:
23509275
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The genetic basis for bacterial mercury methylation.

Parks JM, Johs A, Podar M, Bridou R, Hurt RA Jr, Smith SD, Tomanicek SJ, Qian Y, Brown SD, Brandt CC, Palumbo AV, Smith JC, Wall JD, Elias DA, Liang L.

Science. 2013 Mar 15;339(6125):1332-5. doi: 10.1126/science.1230667. Epub 2013 Feb 7.

PMID:
23393089
[PubMed - indexed for MEDLINE]
Free Article
11.

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities.

Shakya M, Quince C, Campbell JH, Yang ZK, Schadt CW, Podar M.

Environ Microbiol. 2013 Jun;15(6):1882-99. doi: 10.1111/1462-2920.12086. Epub 2013 Feb 6.

PMID:
23387867
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Biogeography of the ecosystems of the healthy human body.

Zhou Y, Gao H, Mihindukulasuriya KA, La Rosa PS, Wylie KM, Vishnivetskaya T, Podar M, Warner B, Tarr PI, Nelson DE, Fortenberry JD, Holland MJ, Burr SE, Shannon WD, Sodergren E, Weinstock GM.

Genome Biol. 2013 Jan 14;14(1):R1. doi: 10.1186/gb-2013-14-1-r1.

PMID:
23316946
[PubMed - in process]
Free PMC Article
13.

Draft genome sequences for two metal-reducing Pelosinus fermentans strains isolated from a Cr(VI)-contaminated site and for type strain R7.

Brown SD, Podar M, Klingeman DM, Johnson CM, Yang ZK, Utturkar SM, Land ML, Mosher JJ, Hurt RA Jr, Phelps TJ, Palumbo AV, Arkin AP, Hazen TC, Elias DA.

J Bacteriol. 2012 Sep;194(18):5147-8. doi: 10.1128/JB.01174-12.

PMID:
22933770
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Sequencing intractable DNA to close microbial genomes.

Hurt RA Jr, Brown SD, Podar M, Palumbo AV, Elias DA.

PLoS One. 2012;7(7):e41295. doi: 10.1371/journal.pone.0041295. Epub 2012 Jul 31.

PMID:
22859974
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A framework for human microbiome research.

Human Microbiome Project Consortium.

Nature. 2012 Jun 13;486(7402):215-21. doi: 10.1038/nature11209.

PMID:
22699610
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Structure, function and diversity of the healthy human microbiome.

Human Microbiome Project Consortium.

Nature. 2012 Jun 13;486(7402):207-14. doi: 10.1038/nature11234.

PMID:
22699609
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Host genetic and environmental effects on mouse intestinal microbiota.

Campbell JH, Foster CM, Vishnivetskaya T, Campbell AG, Yang ZK, Wymore A, Palumbo AV, Chesler EJ, Podar M.

ISME J. 2012 Nov;6(11):2033-44. doi: 10.1038/ismej.2012.54. Epub 2012 Jun 14.

PMID:
22695862
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

An intersubunit disulfide bridge stabilizes the tetrameric nucleoside diphosphate kinase of Aquifex aeolicus.

Boissier F, Georgescauld F, Moynié L, Dupuy JW, Sarger C, Podar M, Lascu I, Giraud MF, Dautant A.

Proteins. 2012 Jun;80(6):1658-68. doi: 10.1002/prot.24062. Epub 2012 Mar 29.

PMID:
22467275
[PubMed - indexed for MEDLINE]
19.

Inter-field variability in the microbial communities of hydrothermal vent deposits from a back-arc basin.

Flores GE, Shakya M, Meneghin J, Yang ZK, Seewald JS, Geoff Wheat C, Podar M, Reysenbach AL.

Geobiology. 2012 Jul;10(4):333-46. doi: 10.1111/j.1472-4669.2012.00325.x. Epub 2012 Mar 23.

PMID:
22443386
[PubMed - indexed for MEDLINE]
20.

Microbial community succession during lactate amendment and electron acceptor limitation reveals a predominance of metal-reducing Pelosinus spp.

Mosher JJ, Phelps TJ, Podar M, Hurt RA Jr, Campbell JH, Drake MM, Moberly JG, Schadt CW, Brown SD, Hazen TC, Arkin AP, Palumbo AV, Faybishenko BA, Elias DA.

Appl Environ Microbiol. 2012 Apr;78(7):2082-91. doi: 10.1128/AEM.07165-11. Epub 2012 Jan 20.

PMID:
22267668
[PubMed - indexed for MEDLINE]
Free PMC Article

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