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Results: 1 to 20 of 85

1.

Experimentally guided models reveal replication principles that shape the mutation distribution of RNA viruses.

Schulte MB, Draghi JA, Plotkin JB, Andino R.

Elife. 2015 Jan 30;4. doi: 10.7554/eLife.03753.

PMID:
25635405
[PubMed - as supplied by publisher]
2.

Formal properties of the probability of fixation: Identities, inequalities and approximations.

McCandlish DM, Epstein CL, Plotkin JB.

Theor Popul Biol. 2015 Feb;99:98-113. doi: 10.1016/j.tpb.2014.11.004. Epub 2014 Nov 20.

PMID:
25450112
[PubMed - in process]
3.

Collapse of cooperation in evolving games.

Stewart AJ, Plotkin JB.

Proc Natl Acad Sci U S A. 2014 Dec 9;111(49):17558-63. doi: 10.1073/pnas.1408618111. Epub 2014 Nov 24.

PMID:
25422421
[PubMed - in process]
4.

Inferring fitness landscapes by regression produces biased estimates of epistasis.

Otwinowski J, Plotkin JB.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):E2301-9. doi: 10.1073/pnas.1400849111. Epub 2014 May 19.

PMID:
24843135
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The equilibrium allele frequency distribution for a population with reproductive skew.

Der R, Plotkin JB.

Genetics. 2014 Apr;196(4):1199-216. doi: 10.1534/genetics.114.161422. Epub 2014 Jan 28.

PMID:
24473932
[PubMed - in process]
6.

The inevitability of unconditionally deleterious substitutions during adaptation.

McCandlish DM, Epstein CL, Plotkin JB.

Evolution. 2014 May;68(5):1351-64. doi: 10.1111/evo.12350. Epub 2014 Mar 4.

PMID:
24410330
[PubMed - indexed for MEDLINE]
7.

Identifying signatures of selection in genetic time series.

Feder AF, Kryazhimskiy S, Plotkin JB.

Genetics. 2014 Feb;196(2):509-22. doi: 10.1534/genetics.113.158220. Epub 2013 Dec 6.

PMID:
24318534
[PubMed - indexed for MEDLINE]
Free Article
8.

Selection biases the prevalence and type of epistasis along adaptive trajectories.

Draghi JA, Plotkin JB.

Evolution. 2013 Nov;67(11):3120-31. doi: 10.1111/evo.12192. Epub 2013 Jul 4.

PMID:
24151997
[PubMed - indexed for MEDLINE]
9.

From extortion to generosity, evolution in the Iterated Prisoner's Dilemma.

Stewart AJ, Plotkin JB.

Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):15348-53. doi: 10.1073/pnas.1306246110. Epub 2013 Sep 3.

PMID:
24003115
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The evolution of genetic architectures underlying quantitative traits.

Rajon E, Plotkin JB.

Proc Biol Sci. 2013 Aug 28;280(1769):20131552. doi: 10.1098/rspb.2013.1552. Print 2013 Oct 22.

PMID:
23986107
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Plaque disruption during transcatheter aortic valve replacement.

Plotkin JB, Siegel RJ, Beigel R.

Eur Heart J Cardiovasc Imaging. 2014 Jan;15(1):117. doi: 10.1093/ehjci/jet151. Epub 2013 Aug 22. No abstract available.

PMID:
23970763
[PubMed - indexed for MEDLINE]
12.

The evolution of complex gene regulation by low-specificity binding sites.

Stewart AJ, Plotkin JB.

Proc Biol Sci. 2013 Aug 14;280(1768):20131313. doi: 10.1098/rspb.2013.1313. Print 2013 Oct 7.

PMID:
23945682
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Misdiagnosis by transoesophageal echo of post-operative cardiac thrombus and tamponade due to Surgicel® Fibrillar.

Dela Cruz SG, Plotkin JB, Esmailian F, Beigel R, Siegel RJ.

Eur Heart J Cardiovasc Imaging. 2014 Jan;15(1):114. doi: 10.1093/ehjci/jet126. Epub 2013 Aug 2. No abstract available.

PMID:
23913333
[PubMed - indexed for MEDLINE]
14.

Immune history shapes specificity of pandemic H1N1 influenza antibody responses.

Li Y, Myers JL, Bostick DL, Sullivan CB, Madara J, Linderman SL, Liu Q, Carter DM, Wrammert J, Esposito S, Principi N, Plotkin JB, Ross TM, Ahmed R, Wilson PC, Hensley SE.

J Exp Med. 2013 Jul 29;210(8):1493-500. doi: 10.1084/jem.20130212. Epub 2013 Jul 15.

PMID:
23857983
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Single hemagglutinin mutations that alter both antigenicity and receptor binding avidity influence influenza virus antigenic clustering.

Li Y, Bostick DL, Sullivan CB, Myers JL, Griesemer SB, Stgeorge K, Plotkin JB, Hensley SE.

J Virol. 2013 Sep;87(17):9904-10. doi: 10.1128/JVI.01023-13. Epub 2013 Jul 3.

PMID:
23824816
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Rate-limiting steps in yeast protein translation.

Shah P, Ding Y, Niemczyk M, Kudla G, Plotkin JB.

Cell. 2013 Jun 20;153(7):1589-601. doi: 10.1016/j.cell.2013.05.049.

PMID:
23791185
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The role of epistasis in protein evolution.

McCandlish DM, Rajon E, Shah P, Ding Y, Plotkin JB.

Nature. 2013 May 30;497(7451):E1-2; discussion E2-3. doi: 10.1038/nature12219. No abstract available.

PMID:
23719465
[PubMed - indexed for MEDLINE]
18.

Consequences of defaunation for a tropical tree community.

Harrison RD, Tan S, Plotkin JB, Slik F, Detto M, Brenes T, Itoh A, Davies SJ.

Ecol Lett. 2013 May;16(5):687-94. doi: 10.1111/ele.12102. Epub 2013 Mar 12.

PMID:
23489437
[PubMed - indexed for MEDLINE]
19.

Weak 5'-mRNA secondary structures in short eukaryotic genes.

Ding Y, Shah P, Plotkin JB.

Genome Biol Evol. 2012;4(10):1046-53. doi: 10.1093/gbe/evs082.

PMID:
23034215
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The population genetics of cooperative gene regulation.

Stewart AJ, Seymour RM, Pomiankowski A, Plotkin JB.

BMC Evol Biol. 2012 Sep 6;12:173. doi: 10.1186/1471-2148-12-173.

PMID:
22954408
[PubMed - indexed for MEDLINE]
Free PMC Article

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