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Results: 1 to 20 of 41

1.

Role of the host genetic variability in the influenza A virus susceptibility.

Arcanjo AC, Mazzocco G, de Oliveira SF, Plewczynski D, Radomski JP.

Acta Biochim Pol. 2014 Sep 4. [Epub ahead of print]

PMID:
25184407
[PubMed - as supplied by publisher]
Free Article
2.

Ensemble learning prediction of protein-protein interactions using proteins functional annotations.

Saha I, Zubek J, Klingström T, Forsberg S, Wikander J, Kierczak M, Maulik U, Plewczynski D.

Mol Biosyst. 2014 Apr;10(4):820-30. doi: 10.1039/c3mb70486f. Epub 2014 Jan 27.

PMID:
24469380
[PubMed - in process]
3.

PPIcons: identification of protein-protein interaction sites in selected organisms.

Sriwastava BK, Basu S, Maulik U, Plewczynski D.

J Mol Model. 2013 Sep;19(9):4059-70. doi: 10.1007/s00894-013-1886-9. Epub 2013 Jun 2.

PMID:
23729008
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Consensus classification of human leukocyte antigen class II proteins.

Saha I, Mazzocco G, Plewczynski D.

Immunogenetics. 2013 Feb;65(2):97-105. doi: 10.1007/s00251-012-0665-6. Epub 2012 Nov 16. Erratum in: Immunogenetics. 2013 Apr;65(4):313.

PMID:
23229472
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

AMS 4.0: consensus prediction of post-translational modifications in protein sequences.

Plewczynski D, Basu S, Saha I.

Amino Acids. 2012 Aug;43(2):573-82. doi: 10.1007/s00726-012-1290-2. Epub 2012 May 4.

PMID:
22555647
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Improved differential evolution for microarray analysis.

Saha I, Plewczynski D, Maulik U, Bandyopadhyay S.

Int J Data Min Bioinform. 2012;6(1):86-103.

PMID:
22479820
[PubMed - indexed for MEDLINE]
7.

Fuzzy clustering of physicochemical and biochemical properties of amino acids.

Saha I, Maulik U, Bandyopadhyay S, Plewczynski D.

Amino Acids. 2012 Aug;43(2):583-94. doi: 10.1007/s00726-011-1106-9. Epub 2011 Oct 13.

PMID:
21993537
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

PSP_MCSVM: brainstorming consensus prediction of protein secondary structures using two-stage multiclass support vector machines.

Chatterjee P, Basu S, Kundu M, Nasipuri M, Plewczynski D.

J Mol Model. 2011 Sep;17(9):2191-201. doi: 10.1007/s00894-011-1102-8. Epub 2011 May 19.

PMID:
21594694
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

PPI_SVM: prediction of protein-protein interactions using machine learning, domain-domain affinities and frequency tables.

Chatterjee P, Basu S, Kundu M, Nasipuri M, Plewczynski D.

Cell Mol Biol Lett. 2011 Jun;16(2):264-78. doi: 10.2478/s11658-011-0008-x. Epub 2011 Mar 20.

PMID:
21442443
[PubMed - indexed for MEDLINE]
10.

GIDMP: good protein-protein interaction data metamining practice.

Plewczynski D, Klingström T.

Cell Mol Biol Lett. 2011 Jun;16(2):258-63. doi: 10.2478/s11658-011-0004-1. Epub 2011 Mar 9.

PMID:
21394448
[PubMed - indexed for MEDLINE]
11.

Detailed mechanism of squalene epoxidase inhibition by terbinafine.

Nowosielski M, Hoffmann M, Wyrwicz LS, Stepniak P, Plewczynski DM, Lazniewski M, Ginalski K, Rychlewski L.

J Chem Inf Model. 2011 Feb 28;51(2):455-62. doi: 10.1021/ci100403b. Epub 2011 Jan 13.

PMID:
21229992
[PubMed - indexed for MEDLINE]
12.

HarmonyDOCK: the structural analysis of poses in protein-ligand docking.

Plewczynski D, Philips A, Von Grotthuss M, Rychlewski L, Ginalski K.

J Comput Biol. 2014 Mar;21(3):247-56. doi: 10.1089/cmb.2009.0111. Epub 2010 Nov 20.

PMID:
21091053
[PubMed - in process]
13.

Brainstorming: weighted voting prediction of inhibitors for protein targets.

Plewczynski D.

J Mol Model. 2011 Sep;17(9):2133-41. doi: 10.1007/s00894-010-0854-x. Epub 2010 Sep 21.

PMID:
20857153
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Protein-protein interaction and pathway databases, a graphical review.

Klingström T, Plewczynski D.

Brief Bioinform. 2011 Nov;12(6):702-13. doi: 10.1093/bib/bbq064. Epub 2010 Sep 17.

PMID:
20851835
[PubMed - indexed for MEDLINE]
Free Article
15.

VoteDock: consensus docking method for prediction of protein-ligand interactions.

Plewczynski D, Łaźniewski M, von Grotthuss M, Rychlewski L, Ginalski K.

J Comput Chem. 2011 Mar;32(4):568-81. doi: 10.1002/jcc.21642. Epub 2010 Sep 1.

PMID:
20812324
[PubMed - indexed for MEDLINE]
16.

Can we trust docking results? Evaluation of seven commonly used programs on PDBbind database.

Plewczynski D, Łaźniewski M, Augustyniak R, Ginalski K.

J Comput Chem. 2011 Mar;32(4):742-55. doi: 10.1002/jcc.21643. Epub 2010 Sep 1.

PMID:
20812323
[PubMed - indexed for MEDLINE]
17.

Species used for drug testing reveal different inhibition susceptibility for 17beta-hydroxysteroid dehydrogenase type 1.

Möller G, Husen B, Kowalik D, Hirvelä L, Plewczynski D, Rychlewski L, Messinger J, Thole H, Adamski J.

PLoS One. 2010 Jun 8;5(6):e10969. doi: 10.1371/journal.pone.0010969.

PMID:
20544026
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

AMS 3.0: prediction of post-translational modifications.

Basu S, Plewczynski D.

BMC Bioinformatics. 2010 Apr 28;11:210. doi: 10.1186/1471-2105-11-210.

PMID:
20423529
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Virtual high throughput screening using combined random forest and flexible docking.

Plewczynski D, von Grotthuss M, Rychlewski L, Ginalski K.

Comb Chem High Throughput Screen. 2009 Jun;12(5):484-9.

PMID:
19519327
[PubMed - indexed for MEDLINE]
20.

Performance of machine learning methods for ligand-based virtual screening.

Plewczynski D, Spieser SA, Koch U.

Comb Chem High Throughput Screen. 2009 May;12(4):358-68. Review.

PMID:
19442065
[PubMed - indexed for MEDLINE]

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