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The "lnc" between 3D chromatin structure and X chromosome inactivation.

Pandya-Jones A, Plath K.

Semin Cell Dev Biol. 2016 Apr 6. pii: S1084-9521(16)30087-8. doi: 10.1016/j.semcdb.2016.04.002. [Epub ahead of print] Review.


Naive Human Pluripotent Cells Feature a Methylation Landscape Devoid of Blastocyst or Germline Memory.

Pastor WA, Chen D, Liu W, Kim R, Sahakyan A, Lukianchikov A, Plath K, Jacobsen SE, Clark AT.

Cell Stem Cell. 2016 Mar 3;18(3):323-9. doi: 10.1016/j.stem.2016.01.019. Epub 2016 Feb 4.


X chromosome reactivation in reprogramming and in development.

Pasque V, Plath K.

Curr Opin Cell Biol. 2015 Dec;37:75-83. doi: 10.1016/ Epub 2015 Nov 11. Review.


A high-throughput screen of inactive X chromosome reactivation identifies the enhancement of DNA demethylation by 5-aza-2'-dC upon inhibition of ribonucleotide reductase.

Minkovsky A, Sahakyan A, Bonora G, Damoiseaux R, Dimitrova E, Rubbi L, Pellegrini M, Radu CG, Plath K.

Epigenetics Chromatin. 2015 Oct 13;8:42. doi: 10.1186/s13072-015-0034-4. eCollection 2015.


The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3.

McHugh CA, Chen CK, Chow A, Surka CF, Tran C, McDonel P, Pandya-Jones A, Blanco M, Burghard C, Moradian A, Sweredoski MJ, Shishkin AA, Su J, Lander ES, Hess S, Plath K, Guttman M.

Nature. 2015 May 14;521(7551):232-6. doi: 10.1038/nature14443. Epub 2015 Apr 27.


X chromosome reactivation dynamics reveal stages of reprogramming to pluripotency.

Pasque V, Tchieu J, Karnik R, Uyeda M, Sadhu Dimashkie A, Case D, Papp B, Bonora G, Patel S, Ho R, Schmidt R, McKee R, Sado T, Tada T, Meissner A, Plath K.

Cell. 2014 Dec 18;159(7):1681-97. doi: 10.1016/j.cell.2014.11.040.


Serotonin and sudden death: differential effects of serotonergic drugs on seizure-induced respiratory arrest in DBA/1 mice.

Faingold CL, Kommajosyula SP, Long X, Plath K, Randall M.

Epilepsy Behav. 2014 Aug;37:198-203. doi: 10.1016/j.yebeh.2014.06.028. Epub 2014 Jul 26.


The Mbd1-Atf7ip-Setdb1 pathway contributes to the maintenance of X chromosome inactivation.

Minkovsky A, Sahakyan A, Rankin-Gee E, Bonora G, Patel S, Plath K.

Epigenetics Chromatin. 2014 Jun 26;7:12. doi: 10.1186/1756-8935-7-12. eCollection 2014.


A mechanistic link between gene regulation and genome architecture in mammalian development.

Bonora G, Plath K, Denholtz M.

Curr Opin Genet Dev. 2014 Aug;27:92-101. doi: 10.1016/j.gde.2014.05.002. Epub 2014 Jul 5. Review.


Doubling down: delving into the details of diacid adsorption at aqueous surfaces.

Valley NA, Blower PG, Wood SR, Plath KL, McWilliams LE, Richmond GL.

J Phys Chem A. 2014 Jul 3;118(26):4778-89. doi: 10.1021/jp501498h. Epub 2014 Jun 23.


Ion-induced reorientation and distribution of pentanone in the air-water boundary layer.

Plath KL, Valley NA, Richmond GL.

J Phys Chem A. 2013 Nov 14;117(45):11514-27. doi: 10.1021/jp408188x. Epub 2013 Oct 31.


Long-range chromatin contacts in embryonic stem cells reveal a role for pluripotency factors and polycomb proteins in genome organization.

Denholtz M, Bonora G, Chronis C, Splinter E, de Laat W, Ernst J, Pellegrini M, Plath K.

Cell Stem Cell. 2013 Nov 7;13(5):602-16. doi: 10.1016/j.stem.2013.08.013. Epub 2013 Sep 12.


Initial characterization of histone H3 serine 10 O-acetylation.

Britton LM, Newhart A, Bhanu NV, Sridharan R, Gonzales-Cope M, Plath K, Janicki SM, Garcia BA.

Epigenetics. 2013 Oct;8(10):1101-13. doi: 10.4161/epi.26025. Epub 2013 Aug 15.


A new route to human embryonic stem cells.

Trounson A, Daley GQ, Pasque V, Plath K.

Nat Med. 2013 Jul;19(7):820-1. doi: 10.1038/nm.3266. No abstract available.


The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome.

Engreitz JM, Pandya-Jones A, McDonel P, Shishkin A, Sirokman K, Surka C, Kadri S, Xing J, Goren A, Lander ES, Plath K, Guttman M.

Science. 2013 Aug 16;341(6147):1237973. doi: 10.1126/science.1237973. Epub 2013 Jul 4.


Stage-specific regulation of reprogramming to induced pluripotent stem cells by Wnt signaling and T cell factor proteins.

Ho R, Papp B, Hoffman JA, Merrill BJ, Plath K.

Cell Rep. 2013 Jun 27;3(6):2113-26. doi: 10.1016/j.celrep.2013.05.015. Epub 2013 Jun 20.


Proteomic and genomic approaches reveal critical functions of H3K9 methylation and heterochromatin protein-1γ in reprogramming to pluripotency.

Sridharan R, Gonzales-Cope M, Chronis C, Bonora G, McKee R, Huang C, Patel S, Lopez D, Mishra N, Pellegrini M, Carey M, Garcia BA, Plath K.

Nat Cell Biol. 2013 Jul;15(7):872-82. doi: 10.1038/ncb2768. Epub 2013 Jun 9.


The pluripotency factor-bound intron 1 of Xist is dispensable for X chromosome inactivation and reactivation in vitro and in vivo.

Minkovsky A, Barakat TS, Sellami N, Chin MH, Gunhanlar N, Gribnau J, Plath K.

Cell Rep. 2013 Mar 28;3(3):905-18. doi: 10.1016/j.celrep.2013.02.018. Epub 2013 Mar 21.


Epigenetics of reprogramming to induced pluripotency.

Papp B, Plath K.

Cell. 2013 Mar 14;152(6):1324-43. doi: 10.1016/j.cell.2013.02.043. Review.


Pluripotency in 3D: genome organization in pluripotent cells.

Denholtz M, Plath K.

Curr Opin Cell Biol. 2012 Dec;24(6):793-801. doi: 10.1016/ Epub 2012 Nov 27. Review.

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