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Items: 10

1.

Protein Kinase A Activation Promotes Cancer Cell Resistance to Glucose Starvation and Anoikis.

Palorini R, Votta G, Pirola Y, De Vitto H, De Palma S, Airoldi C, Vasso M, Ricciardiello F, Lombardi PP, Cirulli C, Rizzi R, Nicotra F, Hiller K, Gelfi C, Alberghina L, Chiaradonna F.

PLoS Genet. 2016 Mar 15;12(3):e1005931. doi: 10.1371/journal.pgen.1005931. eCollection 2016 Mar.

2.

LSG: An External-Memory Tool to Compute String Graphs for Next-Generation Sequencing Data Assembly.

Bonizzoni P, Vedova GD, Pirola Y, Previtali M, Rizzi R.

J Comput Biol. 2016 Mar;23(3):137-49. doi: 10.1089/cmb.2015.0172.

PMID:
26953874
3.

HapCol: accurate and memory-efficient haplotype assembly from long reads.

Pirola Y, Zaccaria S, Dondi R, Klau GW, Pisanti N, Bonizzoni P.

Bioinformatics. 2015 Aug 26. pii: btv495. [Epub ahead of print]

PMID:
26315913
4.

Transcriptome assembly and alternative splicing analysis.

Bonizzoni P, Della Vedova G, Pesole G, Picardi E, Pirola Y, Rizzi R.

Methods Mol Biol. 2015;1269:173-88. doi: 10.1007/978-1-4939-2291-8_11.

PMID:
25577379
5.

Modeling alternative splicing variants from RNA-Seq data with isoform graphs.

Beretta S, Bonizzoni P, Vedova GD, Pirola Y, Rizzi R.

J Comput Biol. 2014 Jan;21(1):16-40. doi: 10.1089/cmb.2013.0112. Epub 2013 Nov 7.

6.

A fast and practical approach to genotype phasing and imputation on a pedigree with erroneous and incomplete information.

Pirola Y, Della Vedova G, Biffani S, Stella A, Bonizzoni P.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Nov-Dec;9(6):1582-94.

PMID:
22848137
7.

PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text.

Pirola Y, Rizzi R, Picardi E, Pesole G, Della Vedova G, Bonizzoni P.

BMC Bioinformatics. 2012 Apr 12;13 Suppl 5:S2. doi: 10.1186/1471-2105-13-S5-S2.

8.

An efficient algorithm for haplotype inference on pedigrees with recombinations and mutations.

Pirola Y, Bonizzoni P, Jiang T.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jan-Feb;9(1):12-25. doi: 10.1109/TCBB.2011.51. Epub 2011 Mar 3.

PMID:
21383417
9.

Pure parsimony xor haplotyping.

Bonizzoni P, Della Vedova G, Dondi R, Pirola Y, Rizzi R.

IEEE/ACM Trans Comput Biol Bioinform. 2010 Oct-Dec;7(4):598-610. doi: 10.1109/TCBB.2010.52.

PMID:
20498511
10.

Detecting alternative gene structures from spliced ESTs: a computational approach.

Bonizzoni P, Mauri G, Pesole G, Picardi E, Pirola Y, Rizzi R.

J Comput Biol. 2009 Jan;16(1):43-66. doi: 10.1089/cmb.2008.0028.

PMID:
19119993
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