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Results: 1 to 20 of 72

1.

Secondary Structure Analyses of the Nuclear rRNA Internal Transcribed Spacers and Assessment of Its Phylogenetic Utility across the Brassicaceae (Mustards).

Edger PP, Tang M, Bird KA, Mayfield DR, Conant G, Mummenhoff K, Koch MA, Pires JC.

PLoS One. 2014 Jul 1;9(7):e101341. doi: 10.1371/journal.pone.0101341. eCollection 2014.

PMID:
24984034
[PubMed - in process]
Free PMC Article
2.

Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time.

Conant GC, Birchler JA, Pires JC.

Curr Opin Plant Biol. 2014 Jun;19C:91-98. doi: 10.1016/j.pbi.2014.05.008. Epub 2014 Jun 5. Review.

PMID:
24907529
[PubMed - as supplied by publisher]
3.

Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea.

Grewe F, Edger PP, Keren I, Sultan L, Pires JC, Ostersetzer-Biran O, Mower JP.

Mitochondrion. 2014 Jun 4. pii: S1567-7249(14)00082-8. doi: 10.1016/j.mito.2014.05.008. [Epub ahead of print]

PMID:
24907441
[PubMed - as supplied by publisher]
4.

Variation of surface ozone in Campo Grande, Brazil: meteorological effect analysis and prediction.

Pires JC, Souza A, Pavão HG, Martins FG.

Environ Sci Pollut Res Int. 2014 May 23. [Epub ahead of print]

PMID:
24854500
[PubMed - as supplied by publisher]
5.

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes.

Liu S, Liu Y, Yang X, Tong C, Edwards D, Parkin IA, Zhao M, Ma J, Yu J, Huang S, Wang X, Wang J, Lu K, Fang Z, Bancroft I, Yang TJ, Hu Q, Wang X, Yue Z, Li H, Yang L, Wu J, Zhou Q, Wang W, King GJ, Pires JC, Lu C, Wu Z, Sampath P, Wang Z, Guo H, Pan S, Yang L, Min J, Zhang D, Jin D, Li W, Belcram H, Tu J, Guan M, Qi C, Du D, Li J, Jiang L, Batley J, Sharpe AG, Park BS, Ruperao P, Cheng F, Waminal NE, Huang Y, Dong C, Wang L, Li J, Hu Z, Zhuang M, Huang Y, Huang J, Shi J, Mei D, Liu J, Lee TH, Wang J, Jin H, Li Z, Li X, Zhang J, Xiao L, Zhou Y, Liu Z, Liu X, Qin R, Tang X, Liu W, Wang Y, Zhang Y, Lee J, Kim HH, Denoeud F, Xu X, Liang X, Hua W, Wang X, Wang J, Chalhoub B, Paterson AH.

Nat Commun. 2014 May 23;5:3930. doi: 10.1038/ncomms4930.

PMID:
24852848
[PubMed - in process]
6.

Current perspectives and the future of domestication studies.

Larson G, Piperno DR, Allaby RG, Purugganan MD, Andersson L, Arroyo-Kalin M, Barton L, Climer Vigueira C, Denham T, Dobney K, Doust AN, Gepts P, Gilbert MT, Gremillion KJ, Lucas L, Lukens L, Marshall FB, Olsen KM, Pires JC, Richerson PJ, Rubio de Casas R, Sanjur OI, Thomas MG, Fuller DQ.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6139-46. doi: 10.1073/pnas.1323964111. Epub 2014 Apr 22.

PMID:
24757054
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Storytelling and story testing in domestication.

Gerbault P, Allaby RG, Boivin N, Rudzinski A, Grimaldi IM, Pires JC, Climer Vigueira C, Dobney K, Gremillion KJ, Barton L, Arroyo-Kalin M, Purugganan MD, Rubio de Casas R, Bollongino R, Burger J, Fuller DQ, Bradley DG, Balding DJ, Richerson PJ, Gilbert MT, Larson G, Thomas MG.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6159-64. doi: 10.1073/pnas.1400425111. Epub 2014 Apr 21.

PMID:
24753572
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids.

Woodhouse MR, Cheng F, Pires JC, Lisch D, Freeling M, Wang X.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5283-8. doi: 10.1073/pnas.1402475111. Epub 2014 Mar 24. Erratum in: Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6527.

PMID:
24706847
[PubMed - indexed for MEDLINE]
9.

Multiple linear and principal component regressions for modelling ecotoxicity bioassay response.

Gomes AI, Pires JC, Figueiredo SA, Boaventura RA.

Environ Technol. 2014 Mar-Apr;35(5-8):945-55.

PMID:
24645478
[PubMed - indexed for MEDLINE]
10.

Phylogenomics of the plant family Araceae.

Henriquez CL, Arias T, Pires JC, Croat TB, Schaal BA.

Mol Phylogenet Evol. 2014 Jun;75:91-102. doi: 10.1016/j.ympev.2014.02.017. Epub 2014 Mar 1.

PMID:
24594061
[PubMed - indexed for MEDLINE]
11.

Diversification times among Brassica (Brassicaceae) crops suggest hybrid formation after 20 million years of divergence.

Arias T, Beilstein MA, Tang M, McKain MR, Pires JC.

Am J Bot. 2014 Jan;101(1):86-91. doi: 10.3732/ajb.1300312. Epub 2014 Jan 3.

PMID:
24388963
[PubMed - in process]
12.

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.

Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, Town CD, Edger PP, Pires JC, Schumaker KS, Jarvis DE, Mandáková T, Lysak MA, van den Bergh E, Schranz ME, Harrison PM, Moses AM, Bureau TE, Wright SI, Blanchette M.

Nat Genet. 2013 Aug;45(8):891-8. doi: 10.1038/ng.2684. Epub 2013 Jun 30.

PMID:
23817568
[PubMed - indexed for MEDLINE]
13.

Wastewater treatment to enhance the economic viability of microalgae culture.

Pires JC, Alvim-Ferraz MC, Martins FG, Simões M.

Environ Sci Pollut Res Int. 2013 Aug;20(8):5096-105. doi: 10.1007/s11356-013-1791-x. Epub 2013 May 15. Review.

PMID:
23673923
[PubMed - indexed for MEDLINE]
14.

Molecular systematics of Allium subgenus Amerallium (Amaryllidaceae) in North America.

Wheeler EJ, Mashayekhi S, McNeal DW, Columbus JT, Pires JC.

Am J Bot. 2013 Apr;100(4):701-11. doi: 10.3732/ajb.1200641. Epub 2013 Mar 26.

PMID:
23535771
[PubMed - indexed for MEDLINE]
Free Article
15.

The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the Paleohexaploid Brassica rapa.

Subramaniam S, Wang X, Freeling M, Pires JC.

Genome Biol Evol. 2013;5(4):646-60. doi: 10.1093/gbe/evt035.

PMID:
23493633
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Watching the grin fade: tracing the effects of polyploidy on different evolutionary time scales.

Mayfield-Jones D, Washburn JD, Arias T, Edger PP, Pires JC, Conant GC.

Semin Cell Dev Biol. 2013 Apr;24(4):320-31. doi: 10.1016/j.semcdb.2013.02.002. Epub 2013 Mar 1. Review.

PMID:
23466286
[PubMed - indexed for MEDLINE]
17.

Evaluating methods for isolating total RNA and predicting the success of sequencing phylogenetically diverse plant transcriptomes.

Johnson MT, Carpenter EJ, Tian Z, Bruskiewich R, Burris JN, Carrigan CT, Chase MW, Clarke ND, Covshoff S, Depamphilis CW, Edger PP, Goh F, Graham S, Greiner S, Hibberd JM, Jordon-Thaden I, Kutchan TM, Leebens-Mack J, Melkonian M, Miles N, Myburg H, Patterson J, Pires JC, Ralph P, Rolf M, Sage RF, Soltis D, Soltis P, Stevenson D, Stewart CN Jr, Surek B, Thomsen CJ, Villarreal JC, Wu X, Zhang Y, Deyholos MK, Wong GK.

PLoS One. 2012;7(11):e50226. doi: 10.1371/journal.pone.0050226. Epub 2012 Nov 21.

PMID:
23185583
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

PAH air pollution at a Portuguese urban area: carcinogenic risks and sources identification.

Slezakova K, Pires JC, Castro D, Alvim-Ferraz MC, Delerue-Matos C, Morais S, Pereira MC.

Environ Sci Pollut Res Int. 2013 Jun;20(6):3932-45. doi: 10.1007/s11356-012-1300-7. Epub 2012 Nov 27.

PMID:
23184127
[PubMed - indexed for MEDLINE]
19.

Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis.

Bekaert M, Edger PP, Hudson CM, Pires JC, Conant GC.

New Phytol. 2012 Oct;196(2):596-605. doi: 10.1111/j.1469-8137.2012.04302.x. Epub 2012 Sep 4.

PMID:
22943527
[PubMed - indexed for MEDLINE]
20.

Escape from preferential retention following repeated whole genome duplications in plants.

Schnable JC, Wang X, Pires JC, Freeling M.

Front Plant Sci. 2012 May 15;3:94. doi: 10.3389/fpls.2012.00094. eCollection 2012.

PMID:
22639677
[PubMed]
Free PMC Article

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