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Results: 1 to 20 of 79

1.

Unreduced gametes: meiotic mishap or evolutionary mechanism?

Mason AS, Pires JC.

Trends Genet. 2014 Oct 16. pii: S0168-9525(14)00159-0. doi: 10.1016/j.tig.2014.09.011. [Epub ahead of print] Review.

PMID:
25445549
[PubMed - as supplied by publisher]
2.

Nonadditive gene expression in polyploids.

Yoo MJ, Liu X, Pires JC, Soltis PS, Soltis DE.

Annu Rev Genet. 2014 Nov 23;48:485-517. doi: 10.1146/annurev-genet-120213-092159.

PMID:
25421600
[PubMed - in process]
3.

Origin of a novel regulatory module by duplication and degeneration of an ancient plant transcription factor.

Floyd SK, Ryan JG, Conway SJ, Brenner E, Burris KP, Burris JN, Chen T, Edger PP, Graham SW, Leebens-Mack JH, Pires JC, Rothfels CJ, Sigel EM, Stevenson DW, Neal Stewart C Jr, Wong GK, Bowman JL.

Mol Phylogenet Evol. 2014 Dec;81:159-73. doi: 10.1016/j.ympev.2014.06.017. Epub 2014 Sep 27.

PMID:
25263420
[PubMed - in process]
Free Article
4.

Investigating the path of plastid genome degradation in an early-transitional clade of heterotrophic orchids, and implications for heterotrophic angiosperms.

Barrett CF, Freudenstein JV, Li J, Mayfield-Jones DR, Perez L, Pires JC, Santos C.

Mol Biol Evol. 2014 Dec;31(12):3095-112. doi: 10.1093/molbev/msu252. Epub 2014 Aug 28.

PMID:
25172958
[PubMed - in process]
5.

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VH, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CH, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P.

Science. 2014 Aug 22;345(6199):950-3. doi: 10.1126/science.1253435. Epub 2014 Aug 21.

PMID:
25146293
[PubMed - indexed for MEDLINE]
6.

Comparative phylogenomics uncovers the impact of symbiotic associations on host genome evolution.

Delaux PM, Varala K, Edger PP, Coruzzi GM, Pires JC, Ané JM.

PLoS Genet. 2014 Jul 17;10(7):e1004487. doi: 10.1371/journal.pgen.1004487. eCollection 2014 Jul.

PMID:
25032823
[PubMed - in process]
Free PMC Article
7.

Secondary structure analyses of the nuclear rRNA internal transcribed spacers and assessment of its phylogenetic utility across the Brassicaceae (mustards).

Edger PP, Tang M, Bird KA, Mayfield DR, Conant G, Mummenhoff K, Koch MA, Pires JC.

PLoS One. 2014 Jul 1;9(7):e101341. doi: 10.1371/journal.pone.0101341. eCollection 2014.

PMID:
24984034
[PubMed - in process]
Free PMC Article
8.

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.

Parkin IA, Koh C, Tang H, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Pires JC, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang X, Paterson AH, King G, Bancroft I, Chalhoub B, Sharpe AG.

Genome Biol. 2014 Jun 10;15(6):R77. doi: 10.1186/gb-2014-15-6-r77.

PMID:
24916971
[PubMed - in process]
Free PMC Article
9.

Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time.

Conant GC, Birchler JA, Pires JC.

Curr Opin Plant Biol. 2014 Jun;19:91-8. doi: 10.1016/j.pbi.2014.05.008. Epub 2014 Jun 5.

PMID:
24907529
[PubMed - in process]
10.

Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea.

Grewe F, Edger PP, Keren I, Sultan L, Pires JC, Ostersetzer-Biran O, Mower JP.

Mitochondrion. 2014 Nov;19 Pt B:135-43. doi: 10.1016/j.mito.2014.05.008. Epub 2014 Jun 4.

PMID:
24907441
[PubMed - in process]
11.

Variation of surface ozone in Campo Grande, Brazil: meteorological effect analysis and prediction.

Pires JC, Souza A, Pavão HG, Martins FG.

Environ Sci Pollut Res Int. 2014 Sep;21(17):10550-9. doi: 10.1007/s11356-014-2977-6. Epub 2014 May 23.

PMID:
24854500
[PubMed - in process]
12.

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes.

Liu S, Liu Y, Yang X, Tong C, Edwards D, Parkin IA, Zhao M, Ma J, Yu J, Huang S, Wang X, Wang J, Lu K, Fang Z, Bancroft I, Yang TJ, Hu Q, Wang X, Yue Z, Li H, Yang L, Wu J, Zhou Q, Wang W, King GJ, Pires JC, Lu C, Wu Z, Sampath P, Wang Z, Guo H, Pan S, Yang L, Min J, Zhang D, Jin D, Li W, Belcram H, Tu J, Guan M, Qi C, Du D, Li J, Jiang L, Batley J, Sharpe AG, Park BS, Ruperao P, Cheng F, Waminal NE, Huang Y, Dong C, Wang L, Li J, Hu Z, Zhuang M, Huang Y, Huang J, Shi J, Mei D, Liu J, Lee TH, Wang J, Jin H, Li Z, Li X, Zhang J, Xiao L, Zhou Y, Liu Z, Liu X, Qin R, Tang X, Liu W, Wang Y, Zhang Y, Lee J, Kim HH, Denoeud F, Xu X, Liang X, Hua W, Wang X, Wang J, Chalhoub B, Paterson AH.

Nat Commun. 2014 May 23;5:3930. doi: 10.1038/ncomms4930.

PMID:
24852848
[PubMed - in process]
13.

Current perspectives and the future of domestication studies.

Larson G, Piperno DR, Allaby RG, Purugganan MD, Andersson L, Arroyo-Kalin M, Barton L, Climer Vigueira C, Denham T, Dobney K, Doust AN, Gepts P, Gilbert MT, Gremillion KJ, Lucas L, Lukens L, Marshall FB, Olsen KM, Pires JC, Richerson PJ, Rubio de Casas R, Sanjur OI, Thomas MG, Fuller DQ.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6139-46. doi: 10.1073/pnas.1323964111. Epub 2014 Apr 22.

PMID:
24757054
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Storytelling and story testing in domestication.

Gerbault P, Allaby RG, Boivin N, Rudzinski A, Grimaldi IM, Pires JC, Climer Vigueira C, Dobney K, Gremillion KJ, Barton L, Arroyo-Kalin M, Purugganan MD, Rubio de Casas R, Bollongino R, Burger J, Fuller DQ, Bradley DG, Balding DJ, Richerson PJ, Gilbert MT, Larson G, Thomas MG.

Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6159-64. doi: 10.1073/pnas.1400425111. Epub 2014 Apr 21.

PMID:
24753572
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids.

Woodhouse MR, Cheng F, Pires JC, Lisch D, Freeling M, Wang X.

Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5283-8. doi: 10.1073/pnas.1402475111. Epub 2014 Mar 24. Erratum in: Proc Natl Acad Sci U S A. 2014 Apr 29;111(17):6527.

PMID:
24706847
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Multiple linear and principal component regressions for modelling ecotoxicity bioassay response.

Gomes AI, Pires JC, Figueiredo SA, Boaventura RA.

Environ Technol. 2014 Mar-Apr;35(5-8):945-55.

PMID:
24645478
[PubMed - indexed for MEDLINE]
17.

Phylogenomics of the plant family Araceae.

Henriquez CL, Arias T, Pires JC, Croat TB, Schaal BA.

Mol Phylogenet Evol. 2014 Jun;75:91-102. doi: 10.1016/j.ympev.2014.02.017. Epub 2014 Mar 1.

PMID:
24594061
[PubMed - indexed for MEDLINE]
18.

Diversification times among Brassica (Brassicaceae) crops suggest hybrid formation after 20 million years of divergence.

Arias T, Beilstein MA, Tang M, McKain MR, Pires JC.

Am J Bot. 2014 Jan;101(1):86-91. doi: 10.3732/ajb.1300312. Epub 2014 Jan 3.

PMID:
24388963
[PubMed - indexed for MEDLINE]
19.

An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.

Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, Town CD, Edger PP, Pires JC, Schumaker KS, Jarvis DE, Mandáková T, Lysak MA, van den Bergh E, Schranz ME, Harrison PM, Moses AM, Bureau TE, Wright SI, Blanchette M.

Nat Genet. 2013 Aug;45(8):891-8. doi: 10.1038/ng.2684. Epub 2013 Jun 30.

PMID:
23817568
[PubMed - indexed for MEDLINE]
20.

Wastewater treatment to enhance the economic viability of microalgae culture.

Pires JC, Alvim-Ferraz MC, Martins FG, Simões M.

Environ Sci Pollut Res Int. 2013 Aug;20(8):5096-105. doi: 10.1007/s11356-013-1791-x. Epub 2013 May 15. Review.

PMID:
23673923
[PubMed - indexed for MEDLINE]

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