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Items: 1 to 20 of 26

1.

MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.).

Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simões ZL.

Insect Mol Biol. 2016 Jun;25(3):216-26. doi: 10.1111/imb.12214. Epub 2016 Feb 8.

PMID:
26853694
2.

Gene expression analysis of laryngeal squamous cell carcinoma.

Plaça JR, Bueno Rde B, Pinheiro DG, Panepucci RA, de Araújo LF, Mamede RC, Figueiredo DL, Silva WA Jr.

Genom Data. 2015 May 8;5:9-12. doi: 10.1016/j.gdata.2015.04.024. eCollection 2015 Sep.

3.

Social evolution. Genomic signatures of evolutionary transitions from solitary to group living.

Kapheim KM, Pan H, Li C, Salzberg SL, Puiu D, Magoc T, Robertson HM, Hudson ME, Venkat A, Fischman BJ, Hernandez A, Yandell M, Ence D, Holt C, Yocum GD, Kemp WP, Bosch J, Waterhouse RM, Zdobnov EM, Stolle E, Kraus FB, Helbing S, Moritz RF, Glastad KM, Hunt BG, Goodisman MA, Hauser F, Grimmelikhuijzen CJ, Pinheiro DG, Nunes FM, Soares MP, Tanaka ÉD, Simões ZL, Hartfelder K, Evans JD, Barribeau SM, Johnson RM, Massey JH, Southey BR, Hasselmann M, Hamacher D, Biewer M, Kent CF, Zayed A, Blatti C 3rd, Sinha S, Johnston JS, Hanrahan SJ, Kocher SD, Wang J, Robinson GE, Zhang G.

Science. 2015 Jun 5;348(6239):1139-43. doi: 10.1126/science.aaa4788. Epub 2015 May 14.

PMID:
25977371
4.

The genomes of two key bumblebee species with primitive eusocial organization.

Sadd BM, Barribeau SM, Bloch G, de Graaf DC, Dearden P, Elsik CG, Gadau J, Grimmelikhuijzen CJ, Hasselmann M, Lozier JD, Robertson HM, Smagghe G, Stolle E, Van Vaerenbergh M, Waterhouse RM, Bornberg-Bauer E, Klasberg S, Bennett AK, Câmara F, Guigó R, Hoff K, Mariotti M, Munoz-Torres M, Murphy T, Santesmasses D, Amdam GV, Beckers M, Beye M, Biewer M, Bitondi MM, Blaxter ML, Bourke AF, Brown MJ, Buechel SD, Cameron R, Cappelle K, Carolan JC, Christiaens O, Ciborowski KL, Clarke DF, Colgan TJ, Collins DH, Cridge AG, Dalmay T, Dreier S, du Plessis L, Duncan E, Erler S, Evans J, Falcon T, Flores K, Freitas FC, Fuchikawa T, Gempe T, Hartfelder K, Hauser F, Helbing S, Humann FC, Irvine F, Jermiin LS, Johnson CE, Johnson RM, Jones AK, Kadowaki T, Kidner JH, Koch V, Köhler A, Kraus FB, Lattorff HM, Leask M, Lockett GA, Mallon EB, Antonio DS, Marxer M, Meeus I, Moritz RF, Nair A, Näpflin K, Nissen I, Niu J, Nunes FM, Oakeshott JG, Osborne A, Otte M, Pinheiro DG, Rossié N, Rueppell O, Santos CG, Schmid-Hempel R, Schmitt BD, Schulte C, Simões ZL, Soares MP, Swevers L, Winnebeck EC, Wolschin F, Yu N, Zdobnov EM, Aqrawi PK, Blankenburg KP, Coyle M, Francisco L, Hernandez AG, Holder M, Hudson ME, Jackson L, Jayaseelan J, Joshi V, Kovar C, Lee SL, Mata R, Mathew T, Newsham IF, Ngo R, Okwuonu G, Pham C, Pu LL, Saada N, Santibanez J, Simmons D, Thornton R, Venkat A, Walden KK, Wu YQ, Debyser G, Devreese B, Asher C, Blommaert J, Chipman AD, Chittka L, Fouks B, Liu J, O'Neill MP, Sumner S, Puiu D, Qu J, Salzberg SL, Scherer SE, Muzny DM, Richards S, Robinson GE, Gibbs RA, Schmid-Hempel P, Worley KC.

Genome Biol. 2015 Apr 24;16:76. doi: 10.1186/s13059-015-0623-3.

5.

Developmental regulation of ecdysone receptor (EcR) and EcR-controlled gene expression during pharate-adult development of honeybees (Apis mellifera).

Mello TR, Aleixo AC, Pinheiro DG, Nunes FM, Bitondi MM, Hartfelder K, Barchuk AR, Simões ZL.

Front Genet. 2014 Dec 22;5:445. doi: 10.3389/fgene.2014.00445. eCollection 2014.

6.

De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers.

Salgado LR, Koop DM, Pinheiro DG, Rivallan R, Le Guen V, Nicolás MF, de Almeida LG, Rocha VR, Magalhães M, Gerber AL, Figueira A, Cascardo JC, de Vasconcelos AR, Silva WA Jr, Coutinho LL, Garcia D.

BMC Genomics. 2014 Mar 26;15:236. doi: 10.1186/1471-2164-15-236.

7.

Bone marrow mesenchymal stromal cells isolated from multiple sclerosis patients have distinct gene expression profile and decreased suppressive function compared with healthy counterparts.

de Oliveira GL, de Lima KW, Colombini AM, Pinheiro DG, Panepucci RA, Palma PV, Brum DG, Covas DT, Simões BP, de Oliveira MC, Donadi EA, Malmegrim KC.

Cell Transplant. 2015;24(2):151-65. doi: 10.3727/096368913X675142. Epub 2013 Nov 20.

PMID:
24256874
8.

Genes related to antiviral activity, cell migration, and lysis are differentially expressed in CD4(+) T cells in human t cell leukemia virus type 1-associated myelopathy/tropical spastic paraparesis patients.

Pinto MT, Malta TM, Rodrigues ES, Pinheiro DG, Panepucci RA, Malmegrim de Farias KC, Sousa Ade P, Takayanagui OM, Tanaka Y, Covas DT, Kashima S.

AIDS Res Hum Retroviruses. 2014 Jun;30(6):610-22. doi: 10.1089/AID.2013.0109. Epub 2013 Oct 16.

9.

Computational framework to support integration of biomolecular and clinical data within a translational approach.

Miyoshi NS, Pinheiro DG, Silva WA Jr, Felipe JC.

BMC Bioinformatics. 2013 Jun 6;14:180. doi: 10.1186/1471-2105-14-180.

10.

Altered expression of degranulation-related genes in CD8+ T cells in human T lymphotropic virus type I infection.

Malta TM, Silva IT, Pinheiro DG, Santos AR, Pinto MT, Panepucci RA, Takayanagui OM, Tanaka Y, Covas DT, Kashima S.

AIDS Res Hum Retroviruses. 2013 May;29(5):826-36. doi: 10.1089/AID.2012.0205. Epub 2013 Feb 5.

PMID:
23301858
11.

SAGE analysis highlights the putative role of underexpression of ribosomal proteins in GH-secreting pituitary adenomas.

de Lima DS, Martins CS, Paixao BM, Amaral FC, Colli LM, Saggioro FP, Neder L, Machado HR, dos Santos AR, Pinheiro DG, Moreira AC, Silva WA Jr, Castro M.

Eur J Endocrinol. 2012 Dec;167(6):759-68. doi: 10.1530/EJE-12-0760. Epub 2012 Sep 19.

12.

High-throughput sequencing of black pepper root transcriptome.

Gordo SM, Pinheiro DG, Moreira EC, Rodrigues SM, Poltronieri MC, de Lemos OF, da Silva IT, Ramos RT, Silva A, Schneider H, Silva WA Jr, Sampaio I, Darnet S.

BMC Plant Biol. 2012 Sep 17;12:168. doi: 10.1186/1471-2229-12-168.

13.

Changes in hippocampal gene expression by 7-nitroindazole in rats submitted to forced swimming stress.

Ferreira FR, Oliveira AM, Dinarte AR, Pinheiro DG, Greene LJ, Silva WA Jr, Joca SR, Guimarães FS.

Genes Brain Behav. 2012 Apr;11(3):303-13. doi: 10.1111/j.1601-183X.2011.00757.x. Epub 2012 Jan 13.

14.

Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual.

Galante PA, Parmigiani RB, Zhao Q, Caballero OL, de Souza JE, Navarro FC, Gerber AL, Nicolás MF, Salim AC, Silva AP, Edsall L, Devalle S, Almeida LG, Ye Z, Kuan S, Pinheiro DG, Tojal I, Pedigoni RG, de Sousa RG, Oliveira TY, de Paula MG, Ohno-Machado L, Kirkness EF, Levy S, da Silva WA Jr, Vasconcelos AT, Ren B, Zago MA, Strausberg RL, Simpson AJ, de Souza SJ, Camargo AA.

Nucleic Acids Res. 2011 Aug;39(14):6056-68. doi: 10.1093/nar/gkr221. Epub 2011 Apr 14.

15.

Ultra-deep sequencing reveals the microRNA expression pattern of the human stomach.

Ribeiro-dos-Santos Â, Khayat AS, Silva A, Alencar DO, Lobato J, Luz L, Pinheiro DG, Varuzza L, Assumpção M, Assumpção P, Santos S, Zanette DL, Silva WA Jr, Burbano R, Darnet S.

PLoS One. 2010 Oct 8;5(10):e13205. doi: 10.1371/journal.pone.0013205.

16.

Genomics and proteomics approaches to the study of cancer-stroma interactions.

Rodrigues-Lisoni FC, Peitl P Jr, Vidotto A, Polachini GM, Maniglia JV, Carmona-Raphe J, Cunha BR, Henrique T, Souza CF, Teixeira RA, Fukuyama EE, Michaluart P Jr, de Carvalho MB, Oliani SM; Head and Neck Genome Project GENCAPO, Tajara EH, Cury PM, de Carvalho MB, Dias-Neto E, Figueiredo DL, Fukuyama EE, Góis-Filho JF, Leopoldino AM, Mamede RC, Michaluart-Junior P, Moyses RA, Nóbrega FG, Nóbrega MP, Nunes FD, Ojopi EF, Serafini LN, Severino P, Silva AM, Silva WA Jr, Silveira NJ, Souza SC, Tajara EH, Wünsch-Filho V, Amar A, Bandeira CM, Braconi MA, Brandão LG, Brandão RM, Canto AL, Cerione M, Cicco R, Chagas MJ, Chedid H, Costa A, Cunha BR, Curioni OA, Fortes CS, Franzi SA, Frizzera AP, Gazito D, Guimarães PE, Kaneto CM, López RV, Macarenco R, Magalhães MR, Meneses C, Mercante AM, Pinheiro DG, Polachini GM, Rapoport A, Rodini CO, Rodrigues-Lisoni FC, Rodrigues RV, Rossi L, Santos AR, Santos M, Settani F, Silva FA, Silva IT, Souza TB, Stabenow E, Takamori JT, Valentim PJ, Vidotto A, Xavier FC, Yamagushi F, Cominato ML, Correa PM, Mendes GS, Paiva R, Ramos O, Silva C, Silva MJ, Tarlá MV.

BMC Med Genomics. 2010 May 4;3:14. doi: 10.1186/1755-8794-3-14.

17.

Epigenetic silencing of CRABP2 and MX1 in head and neck tumors.

Calmon MF, Rodrigues RV, Kaneto CM, Moura RP, Silva SD, Mota LD, Pinheiro DG, Torres C, de Carvalho AF, Cury PM, Nunes FD, Nishimoto IN, Soares FA, da Silva AM, Kowalski LP, Brentani H, Zanelli CF, Silva WA Jr, Rahal P, Tajara EH, Carraro DM, Camargo AA, Valentini SR.

Neoplasia. 2009 Dec;11(12):1329-39.

18.

A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling.

Pinheiro DG, Galante PA, de Souza SJ, Zago MA, Silva WA Jr.

BMC Bioinformatics. 2009 Jun 6;10:170. doi: 10.1186/1471-2105-10-170.

19.

Searching for molecular markers in head and neck squamous cell carcinomas (HNSCC) by statistical and bioinformatic analysis of larynx-derived SAGE libraries.

Silveira NJ, Varuzza L, Machado-Lima A, Lauretto MS, Pinheiro DG, Rodrigues RV, Severino P, Nobrega FG; Head and Neck Genome Project GENCAPO, Silva WA Jr, de B Pereira CA, Tajara EH.

BMC Med Genomics. 2008 Nov 11;1:56. doi: 10.1186/1755-8794-1-56.

20.

miRNApath: a database of miRNAs, target genes and metabolic pathways.

Chiromatzo AO, Oliveira TY, Pereira G, Costa AY, Montesco CA, Gras DE, Yosetake F, Vilar JB, Cervato M, Prado PR, Cardenas RG, Cerri R, Borges RL, Lemos RN, Alvarenga SM, Perallis VR, Pinheiro DG, Silva IT, Brandão RM, Cunha MA, Giuliatti S, Silva WA Jr.

Genet Mol Res. 2007 Oct 5;6(4):859-65.

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