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Results: 1 to 20 of 21

1.

De novo transcriptome analysis of Hevea brasiliensis tissues by RNA-seq and screening for molecular markers.

Salgado LR, Koop DM, Pinheiro DG, Rivallan R, Le Guen V, Nicolás MF, de Almeida LG, Rocha VR, Magalhães M, Gerber AL, Figueira A, Cascardo JC, de Vasconcelos AR, Silva WA Jr, Coutinho LL, Garcia D.

BMC Genomics. 2014 Mar 26;15:236. doi: 10.1186/1471-2164-15-236.

PMID:
24670056
[PubMed - in process]
Free PMC Article
2.

Bone marrow mesenchymal stromal cells isolated from multiple sclerosis patients have distinct gene expression profile and decreased suppressive function compared with healthy counterparts.

de Oliveira GL, de Lima KW, Colombini AM, Pinheiro DG, Panepucci RA, Palma PV, Brum DG, Covas DT, Simões BP, de Oliveira MC, Donadi EA, Malmegrim KC.

Cell Transplant. 2013 Nov 20. [Epub ahead of print]

PMID:
24256874
[PubMed - as supplied by publisher]
3.

Genes related to antiviral activity, cell migration, and lysis are differentially expressed in CD4(+) T cells in human t cell leukemia virus type 1-associated myelopathy/tropical spastic paraparesis patients.

Pinto MT, Malta TM, Rodrigues ES, Pinheiro DG, Panepucci RA, Malmegrim de Farias KC, Sousa Ade P, Takayanagui OM, Tanaka Y, Covas DT, Kashima S.

AIDS Res Hum Retroviruses. 2014 Jun;30(6):610-22. doi: 10.1089/AID.2013.0109. Epub 2013 Oct 16.

PMID:
24041428
[PubMed - in process]
4.

Computational framework to support integration of biomolecular and clinical data within a translational approach.

Miyoshi NS, Pinheiro DG, Silva WA Jr, Felipe JC.

BMC Bioinformatics. 2013 Jun 6;14:180. doi: 10.1186/1471-2105-14-180.

PMID:
23742129
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Altered expression of degranulation-related genes in CD8+ T cells in human T lymphotropic virus type I infection.

Malta TM, Silva IT, Pinheiro DG, Santos AR, Pinto MT, Panepucci RA, Takayanagui OM, Tanaka Y, Covas DT, Kashima S.

AIDS Res Hum Retroviruses. 2013 May;29(5):826-36. doi: 10.1089/AID.2012.0205. Epub 2013 Feb 5.

PMID:
23301858
[PubMed - indexed for MEDLINE]
6.

SAGE analysis highlights the putative role of underexpression of ribosomal proteins in GH-secreting pituitary adenomas.

de Lima DS, Martins CS, Paixao BM, Amaral FC, Colli LM, Saggioro FP, Neder L, Machado HR, dos Santos AR, Pinheiro DG, Moreira AC, Silva WA Jr, Castro M.

Eur J Endocrinol. 2012 Dec;167(6):759-68. doi: 10.1530/EJE-12-0760. Epub 2012 Sep 19.

PMID:
22992986
[PubMed - indexed for MEDLINE]
Free Article
7.

High-throughput sequencing of black pepper root transcriptome.

Gordo SM, Pinheiro DG, Moreira EC, Rodrigues SM, Poltronieri MC, de Lemos OF, da Silva IT, Ramos RT, Silva A, Schneider H, Silva WA Jr, Sampaio I, Darnet S.

BMC Plant Biol. 2012 Sep 17;12:168. doi: 10.1186/1471-2229-12-168.

PMID:
22984782
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Changes in hippocampal gene expression by 7-nitroindazole in rats submitted to forced swimming stress.

Ferreira FR, Oliveira AM, Dinarte AR, Pinheiro DG, Greene LJ, Silva WA Jr, Joca SR, Guimarães FS.

Genes Brain Behav. 2012 Apr;11(3):303-13. doi: 10.1111/j.1601-183X.2011.00757.x. Epub 2012 Jan 13.

PMID:
22142142
[PubMed - indexed for MEDLINE]
9.

Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual.

Galante PA, Parmigiani RB, Zhao Q, Caballero OL, de Souza JE, Navarro FC, Gerber AL, Nicolás MF, Salim AC, Silva AP, Edsall L, Devalle S, Almeida LG, Ye Z, Kuan S, Pinheiro DG, Tojal I, Pedigoni RG, de Sousa RG, Oliveira TY, de Paula MG, Ohno-Machado L, Kirkness EF, Levy S, da Silva WA Jr, Vasconcelos AT, Ren B, Zago MA, Strausberg RL, Simpson AJ, de Souza SJ, Camargo AA.

Nucleic Acids Res. 2011 Aug;39(14):6056-68. doi: 10.1093/nar/gkr221. Epub 2011 Apr 14.

PMID:
21493686
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Ultra-deep sequencing reveals the microRNA expression pattern of the human stomach.

Ribeiro-dos-Santos Â, Khayat AS, Silva A, Alencar DO, Lobato J, Luz L, Pinheiro DG, Varuzza L, Assumpção M, Assumpção P, Santos S, Zanette DL, Silva WA Jr, Burbano R, Darnet S.

PLoS One. 2010 Oct 8;5(10):e13205. doi: 10.1371/journal.pone.0013205.

PMID:
20949028
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genomics and proteomics approaches to the study of cancer-stroma interactions.

Rodrigues-Lisoni FC, Peitl P Jr, Vidotto A, Polachini GM, Maniglia JV, Carmona-Raphe J, Cunha BR, Henrique T, Souza CF, Teixeira RA, Fukuyama EE, Michaluart P Jr, de Carvalho MB, Oliani SM; Head and Neck Genome Project GENCAPO, Tajara EH, Cury PM, de Carvalho MB, Dias-Neto E, Figueiredo DL, Fukuyama EE, Góis-Filho JF, Leopoldino AM, Mamede RC, Michaluart-Junior P, Moyses RA, Nóbrega FG, Nóbrega MP, Nunes FD, Ojopi EF, Serafini LN, Severino P, Silva AM, Silva WA Jr, Silveira NJ, Souza SC, Tajara EH, Wünsch-Filho V, Amar A, Bandeira CM, Braconi MA, Brandão LG, Brandão RM, Canto AL, Cerione M, Cicco R, Chagas MJ, Chedid H, Costa A, Cunha BR, Curioni OA, Fortes CS, Franzi SA, Frizzera AP, Gazito D, Guimarães PE, Kaneto CM, López RV, Macarenco R, Magalhães MR, Meneses C, Mercante AM, Pinheiro DG, Polachini GM, Rapoport A, Rodini CO, Rodrigues-Lisoni FC, Rodrigues RV, Rossi L, Santos AR, Santos M, Settani F, Silva FA, Silva IT, Souza TB, Stabenow E, Takamori JT, Valentim PJ, Vidotto A, Xavier FC, Yamagushi F, Cominato ML, Correa PM, Mendes GS, Paiva R, Ramos O, Silva C, Silva MJ, Tarlá MV.

BMC Med Genomics. 2010 May 4;3:14. doi: 10.1186/1755-8794-3-14.

PMID:
20441585
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Epigenetic silencing of CRABP2 and MX1 in head and neck tumors.

Calmon MF, Rodrigues RV, Kaneto CM, Moura RP, Silva SD, Mota LD, Pinheiro DG, Torres C, de Carvalho AF, Cury PM, Nunes FD, Nishimoto IN, Soares FA, da Silva AM, Kowalski LP, Brentani H, Zanelli CF, Silva WA Jr, Rahal P, Tajara EH, Carraro DM, Camargo AA, Valentini SR.

Neoplasia. 2009 Dec;11(12):1329-39.

PMID:
20019841
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling.

Pinheiro DG, Galante PA, de Souza SJ, Zago MA, Silva WA Jr.

BMC Bioinformatics. 2009 Jun 6;10:170. doi: 10.1186/1471-2105-10-170.

PMID:
19500384
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Searching for molecular markers in head and neck squamous cell carcinomas (HNSCC) by statistical and bioinformatic analysis of larynx-derived SAGE libraries.

Silveira NJ, Varuzza L, Machado-Lima A, Lauretto MS, Pinheiro DG, Rodrigues RV, Severino P, Nobrega FG; Head and Neck Genome Project GENCAPO, Silva WA Jr, de B Pereira CA, Tajara EH.

BMC Med Genomics. 2008 Nov 11;1:56. doi: 10.1186/1755-8794-1-56.

PMID:
19014460
[PubMed]
Free PMC Article
15.

miRNApath: a database of miRNAs, target genes and metabolic pathways.

Chiromatzo AO, Oliveira TY, Pereira G, Costa AY, Montesco CA, Gras DE, Yosetake F, Vilar JB, Cervato M, Prado PR, Cardenas RG, Cerri R, Borges RL, Lemos RN, Alvarenga SM, Perallis VR, Pinheiro DG, Silva IT, Brandão RM, Cunha MA, Giuliatti S, Silva WA Jr.

Genet Mol Res. 2007 Oct 5;6(4):859-65.

PMID:
18058708
[PubMed - indexed for MEDLINE]
Free Article
16.

Spontaneous respiratory modulation improves cardiovascular control in essential hypertension.

Pinheiro CH, Medeiros RA, Pinheiro DG, Marinho Mde J.

Arq Bras Cardiol. 2007 Jun;88(6):651-9. English, Portuguese. Erratum in: Arq Bras Cardiol. 2007 Aug;89(2):138.

PMID:
17664992
[PubMed - indexed for MEDLINE]
Free Article
17.

Laparoscopic-assisted radical cystectomy with U-shaped orthotopic ileal neobladder constructed using nonabsorbable titanium staples.

Abreu SC, Araújo MB, Silveira RA, Regadas RP, Pinheiro DG, Messias FI, Argollo RS, Guedes GA, Gadelha JB, Fonseca GN.

Urology. 2006 Jul;68(1):193-7. Epub 2006 Jun 27.

PMID:
16806425
[PubMed - indexed for MEDLINE]
18.

Proteomic and SAGE profiling of murine melanoma progression indicates the reduction of proteins responsible for ROS degradation.

de Souza GA, Godoy LM, Teixeira VR, Otake AH, Sabino A, Rosa JC, Dinarte AR, Pinheiro DG, Silva WA Jr, Eberlin MN, Chammas R, Greene LJ.

Proteomics. 2006 Mar;6(5):1460-70.

PMID:
16429458
[PubMed - indexed for MEDLINE]
19.

Identification and complete sequencing of novel human transcripts through the use of mouse orthologs and testis cDNA sequences.

Ferreira EN, Pires LC, Parmigiani RB, Bettoni F, Puga RD, Pinheiro DG, Andrade LE, Cruz LO, Degaki TL, Faria M Jr, Festa F, Giannella-Neto D, Giorgi RR, Goldman GH, Granja F, Gruber A, Hackel C, Henrique-Silva F, Malnic B, Manzini CV, Marie SK, Martinez-Rossi NM, Oba-Shinjo SM, Pardini MI, Rahal P, Rainho CA, Rogatto SR, Romano CM, Rodrigues V, Sales MM, Savoldi M, da Silva ID, da Silva NP, de Souza SJ, Tajara EH, Silva WA Jr, Simpson AJ, Sogayar MC, Camargo AA, Carraro DM.

Genet Mol Res. 2004 Dec 30;3(4):493-511.

PMID:
15688316
[PubMed - indexed for MEDLINE]
Free Article
20.

The use of Open Reading frame ESTs (ORESTES) for analysis of the honey bee transcriptome.

Nunes FM, Valente V, Sousa JF, Cunha MA, Pinheiro DG, Maia RM, Araujo DD, Costa MC, Martins WK, Carvalho AF, Monesi N, Nascimento AM, Peixoto PM, Silva MF, Ramos RG, Reis LF, Dias-Neto E, Souza SJ, Simpson AJ, Zago MA, Soares AE, Bitondi MM, Espreafico EM, Espindola FS, Paco-Larson ML, Simoes ZL, Hartfelder K, Silva WA Jr.

BMC Genomics. 2004 Nov 3;5:84.

PMID:
15527499
[PubMed - indexed for MEDLINE]
Free PMC Article

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