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Results: 1 to 20 of 27

1.

Variants near TERT and TERC influencing telomere length are associated with high-grade glioma risk.

Walsh KM, Codd V, Smirnov IV, Rice T, Decker PA, Hansen HM, Kollmeyer T, Kosel ML, Molinaro AM, McCoy LS, Bracci PM, Cabriga BS, Pekmezci M, Zheng S, Wiemels JL, Pico AR, Tihan T, Berger MS, Chang SM, Prados MD, Lachance DH, O'Neill BP, Sicotte H, Eckel-Passow JE; ENGAGE Consortium Telomere Group, van der Harst P, Wiencke JK, Samani NJ, Jenkins RB, Wrensch MR.

Nat Genet. 2014 Jul;46(7):731-5. doi: 10.1038/ng.3004. Epub 2014 Jun 8.

PMID:
24908248
[PubMed - in process]
2.

NOA: a cytoscape plugin for network ontology analysis.

Zhang C, Wang J, Hanspers K, Xu D, Chen L, Pico AR.

Bioinformatics. 2013 Aug 15;29(16):2066-7. doi: 10.1093/bioinformatics/btt334. Epub 2013 Jun 7.

PMID:
23749961
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genetic variants in telomerase-related genes are associated with an older age at diagnosis in glioma patients: evidence for distinct pathways of gliomagenesis.

Walsh KM, Rice T, Decker PA, Kosel ML, Kollmeyer T, Hansen HM, Zheng S, McCoy LS, Bracci PM, Anderson E, Hsuang G, Wiemels JL, Pico AR, Smirnov I, Molinaro AM, Tihan T, Berger MS, Chang SM, Prados MD, Lachance DH, Sicotte H, Eckel-Passow JE, Wiencke JK, Jenkins RB, Wrensch MR.

Neuro Oncol. 2013 Aug;15(8):1041-7. doi: 10.1093/neuonc/not051. Epub 2013 Jun 3.

PMID:
23733245
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Cytoscape app store.

Lotia S, Montojo J, Dong Y, Bader GD, Pico AR.

Bioinformatics. 2013 May 15;29(10):1350-1. doi: 10.1093/bioinformatics/btt138. Epub 2013 Apr 16.

PMID:
23595664
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Inherited variant on chromosome 11q23 increases susceptibility to IDH-mutated but not IDH-normal gliomas regardless of grade or histology.

Rice T, Zheng S, Decker PA, Walsh KM, Bracci P, Xiao Y, McCoy LS, Smirnov I, Patoka JS, Hansen HM, Hsuang G, Wiemels JL, Tihan T, Pico AR, Prados MD, Chang SM, Berger MS, Caron A, Fink S, Kollmeyer T, Rynearson A, Voss J, Kosel ML, Fridley BL, Lachance DH, Eckel-Passow JE, Sicotte H, O'Neill BP, Giannini C, Wiencke JK, Jenkins RB, Wrensch MR.

Neuro Oncol. 2013 May;15(5):535-41. doi: 10.1093/neuonc/nos324. Epub 2013 Jan 29.

PMID:
23361564
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Analysis of 60 reported glioma risk SNPs replicates published GWAS findings but fails to replicate associations from published candidate-gene studies.

Walsh KM, Anderson E, Hansen HM, Decker PA, Kosel ML, Kollmeyer T, Rice T, Zheng S, Xiao Y, Chang JS, McCoy LS, Bracci PM, Wiemels JL, Pico AR, Smirnov I, Lachance DH, Sicotte H, Eckel-Passow JE, Wiencke JK, Jenkins RB, Wrensch MR.

Genet Epidemiol. 2013 Feb;37(2):222-8. doi: 10.1002/gepi.21707. Epub 2012 Dec 31.

PMID:
23280628
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A travel guide to Cytoscape plugins.

Saito R, Smoot ME, Ono K, Ruscheinski J, Wang PL, Lotia S, Pico AR, Bader GD, Ideker T.

Nat Methods. 2012 Nov;9(11):1069-76. doi: 10.1038/nmeth.2212. Epub 2012 Nov 6.

PMID:
23132118
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage.

Wamstad JA, Alexander JM, Truty RM, Shrikumar A, Li F, Eilertson KE, Ding H, Wylie JN, Pico AR, Capra JA, Erwin G, Kattman SJ, Keller GM, Srivastava D, Levine SS, Pollard KS, Holloway AK, Boyer LA, Bruneau BG.

Cell. 2012 Sep 28;151(1):206-20. doi: 10.1016/j.cell.2012.07.035. Epub 2012 Sep 12.

PMID:
22981692
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A low-frequency variant at 8q24.21 is strongly associated with risk of oligodendroglial tumors and astrocytomas with IDH1 or IDH2 mutation.

Jenkins RB, Xiao Y, Sicotte H, Decker PA, Kollmeyer TM, Hansen HM, Kosel ML, Zheng S, Walsh KM, Rice T, Bracci P, McCoy LS, Smirnov I, Patoka JS, Hsuang G, Wiemels JL, Tihan T, Pico AR, Prados MD, Chang SM, Berger MS, Caron AA, Fink SR, Halder C, Rynearson AL, Fridley BL, Buckner JC, O'Neill BP, Giannini C, Lachance DH, Wiencke JK, Eckel-Passow JE, Wrensch MR.

Nat Genet. 2012 Oct;44(10):1122-5. doi: 10.1038/ng.2388. Epub 2012 Aug 26.

PMID:
22922872
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

GO-Elite: a flexible solution for pathway and ontology over-representation.

Zambon AC, Gaj S, Ho I, Hanspers K, Vranizan K, Evelo CT, Conklin BR, Pico AR, Salomonis N.

Bioinformatics. 2012 Aug 15;28(16):2209-10. doi: 10.1093/bioinformatics/bts366. Epub 2012 Jun 27.

PMID:
22743224
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Mosaic: making biological sense of complex networks.

Zhang C, Hanspers K, Kuchinsky A, Salomonis N, Xu D, Pico AR.

Bioinformatics. 2012 Jul 15;28(14):1943-4. doi: 10.1093/bioinformatics/bts278. Epub 2012 May 9.

PMID:
22576176
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

WikiPathways: building research communities on biological pathways.

Kelder T, van Iersel MP, Hanspers K, Kutmon M, Conklin BR, Evelo CT, Pico AR.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1301-7. doi: 10.1093/nar/gkr1074. Epub 2011 Nov 16.

PMID:
22096230
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Finding the right questions: exploratory pathway analysis to enhance biological discovery in large datasets.

Kelder T, Conklin BR, Evelo CT, Pico AR.

PLoS Biol. 2010 Aug 31;8(8). pii: e1000472. doi: 10.1371/journal.pbio.1000472.

PMID:
20824171
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Structure of the human BK channel Ca2+-activation apparatus at 3.0 A resolution.

Yuan P, Leonetti MD, Pico AR, Hsiung Y, MacKinnon R.

Science. 2010 Jul 9;329(5988):182-6. doi: 10.1126/science.1190414. Epub 2010 May 27.

PMID:
20508092
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Alternative splicing regulates mouse embryonic stem cell pluripotency and differentiation.

Salomonis N, Schlieve CR, Pereira L, Wahlquist C, Colas A, Zambon AC, Vranizan K, Spindler MJ, Pico AR, Cline MS, Clark TA, Williams A, Blume JE, Samal E, Mercola M, Merrill BJ, Conklin BR.

Proc Natl Acad Sci U S A. 2010 Jun 8;107(23):10514-9. doi: 10.1073/pnas.0912260107. Epub 2010 May 24.

PMID:
20498046
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services.

van Iersel MP, Pico AR, Kelder T, Gao J, Ho I, Hanspers K, Conklin BR, Evelo CT.

BMC Bioinformatics. 2010 Jan 4;11:5. doi: 10.1186/1471-2105-11-5.

PMID:
20047655
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors.

Salomonis N, Nelson B, Vranizan K, Pico AR, Hanspers K, Kuchinsky A, Ta L, Mercola M, Conklin BR.

PLoS Comput Biol. 2009 Nov;5(11):e1000553. doi: 10.1371/journal.pcbi.1000553. Epub 2009 Nov 6.

PMID:
19893621
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Mining biological pathways using WikiPathways web services.

Kelder T, Pico AR, Hanspers K, van Iersel MP, Evelo C, Conklin BR.

PLoS One. 2009 Jul 30;4(7):e6447. doi: 10.1371/journal.pone.0006447.

PMID:
19649250
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Variants in the CDKN2B and RTEL1 regions are associated with high-grade glioma susceptibility.

Wrensch M, Jenkins RB, Chang JS, Yeh RF, Xiao Y, Decker PA, Ballman KV, Berger M, Buckner JC, Chang S, Giannini C, Halder C, Kollmeyer TM, Kosel ML, LaChance DH, McCoy L, O'Neill BP, Patoka J, Pico AR, Prados M, Quesenberry C, Rice T, Rynearson AL, Smirnov I, Tihan T, Wiemels J, Yang P, Wiencke JK.

Nat Genet. 2009 Aug;41(8):905-8. doi: 10.1038/ng.408. Epub 2009 Jul 5.

PMID:
19578366
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system.

Pico AR, Smirnov IV, Chang JS, Yeh RF, Wiemels JL, Wiencke JK, Tihan T, Conklin BR, Wrensch M.

Nucleic Acids Res. 2009 Jan;37(Database issue):D803-9. doi: 10.1093/nar/gkn756. Epub 2008 Nov 4.

PMID:
18984625
[PubMed - indexed for MEDLINE]
Free PMC Article

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