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A comparison of younger and older men who have sex with men using data from Jamaica AIDS Support for Life: characteristics associated with HIV status.

Budhwani H, Hearld KR, Barrow G, Peterson SN, Walton-Levermore K.

Int J STD AIDS. 2015 Jul 2. pii: 0956462415594752. [Epub ahead of print]


Genomic and transcriptomic differences in community acquired methicillin resistant Staphylococcus aureus USA300 and USA400 strains.

Jones MB, Montgomery CP, Boyle-Vavra S, Shatzkes K, Maybank R, Frank BC, Peterson SN, Daum RS.

BMC Genomics. 2014 Dec 19;15(1):1145. [Epub ahead of print]


Microbiota organization is a distinct feature of proximal colorectal cancers.

Dejea CM, Wick EC, Hechenbleikner EM, White JR, Mark Welch JL, Rossetti BJ, Peterson SN, Snesrud EC, Borisy GG, Lazarev M, Stein E, Vadivelu J, Roslani AC, Malik AA, Wanyiri JW, Goh KL, Thevambiga I, Fu K, Wan F, Llosa N, Housseau F, Romans K, Wu X, McAllister FM, Wu S, Vogelstein B, Kinzler KW, Pardoll DM, Sears CL.

Proc Natl Acad Sci U S A. 2014 Dec 23;111(51):18321-6. doi: 10.1073/pnas.1406199111. Epub 2014 Dec 8.


Immune homeostasis, dysbiosis and therapeutic modulation of the gut microbiota.

Peterson CT, Sharma V, Elmén L, Peterson SN.

Clin Exp Immunol. 2015 Mar;179(3):363-77. doi: 10.1111/cei.12474. Review.


Functional expression of dental plaque microbiota.

Peterson SN, Meissner T, Su AI, Snesrud E, Ong AC, Schork NJ, Bretz WA.

Front Cell Infect Microbiol. 2014 Aug 14;4:108. doi: 10.3389/fcimb.2014.00108. eCollection 2014.


Expression and solubility testing in a high-throughput environment.

Kwon K, Peterson SN.

Methods Mol Biol. 2014;1140:75-88. doi: 10.1007/978-1-4939-0354-2_6.


High-throughput cloning for biophysical applications.

Kwon K, Peterson SN.

Methods Mol Biol. 2014;1140:61-74. doi: 10.1007/978-1-4939-0354-2_5.


LUD, a new protein domain associated with lactate utilization.

Hwang WC, Bakolitsa C, Punta M, Coggill PC, Bateman A, Axelrod HL, Rawlings ND, Sedova M, Peterson SN, Eberhardt RY, Aravind L, Pascual J, Godzik A.

BMC Bioinformatics. 2013 Nov 26;14:341. doi: 10.1186/1471-2105-14-341.


Evolution of high-level ethambutol-resistant tuberculosis through interacting mutations in decaprenylphosphoryl-β-D-arabinose biosynthetic and utilization pathway genes.

Safi H, Lingaraju S, Amin A, Kim S, Jones M, Holmes M, McNeil M, Peterson SN, Chatterjee D, Fleischmann R, Alland D.

Nat Genet. 2013 Oct;45(10):1190-7. doi: 10.1038/ng.2743. Epub 2013 Sep 1.


A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection.

Deatherage Kaiser BL, Li J, Sanford JA, Kim YM, Kronewitter SR, Jones MB, Peterson CT, Peterson SN, Frank BC, Purvine SO, Brown JN, Metz TO, Smith RD, Heffron F, Adkins JN.

PLoS One. 2013 Jun 26;8(6):e67155. Print 2013.


Salmonella modulates metabolism during growth under conditions that induce expression of virulence genes.

Kim YM, Schmidt BJ, Kidwai AS, Jones MB, Deatherage Kaiser BL, Brewer HM, Mitchell HD, Palsson BO, McDermott JE, Heffron F, Smith RD, Peterson SN, Ansong C, Hyduke DR, Metz TO, Adkins JN.

Mol Biosyst. 2013 Jun;9(6):1522-34. doi: 10.1039/c3mb25598k. Epub 2013 Apr 5.


The dental plaque microbiome in health and disease.

Peterson SN, Snesrud E, Liu J, Ong AC, Kilian M, Schork NJ, Bretz W.

PLoS One. 2013;8(3):e58487. doi: 10.1371/journal.pone.0058487. Epub 2013 Mar 8.


Molecular mechanism of quinone signaling mediated through S-quinonization of a YodB family repressor QsrR.

Ji Q, Zhang L, Jones MB, Sun F, Deng X, Liang H, Cho H, Brugarolas P, Gao YN, Peterson SN, Lan L, Bae T, He C.

Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5010-5. doi: 10.1073/pnas.1219446110. Epub 2013 Mar 11. Erratum in: Proc Natl Acad Sci U S A. 2013 May 28;110(22):9183.


Mutational activation of the AmgRS two-component system in aminoglycoside-resistant Pseudomonas aeruginosa.

Lau CH, Fraud S, Jones M, Peterson SN, Poole K.

Antimicrob Agents Chemother. 2013 May;57(5):2243-51. doi: 10.1128/AAC.00170-13. Epub 2013 Mar 4.


A multi-omic systems approach to elucidating Yersinia virulence mechanisms.

Ansong C, Schrimpe-Rutledge AC, Mitchell HD, Chauhan S, Jones MB, Kim YM, McAteer K, Deatherage Kaiser BL, Dubois JL, Brewer HM, Frank BC, McDermott JE, Metz TO, Peterson SN, Smith RD, Motin VL, Adkins JN.

Mol Biosyst. 2013 Jan 27;9(1):44-54. doi: 10.1039/c2mb25287b. Epub 2012 Nov 13.


Structural characterization and comparison of three acyl-carrier-protein synthases from pathogenic bacteria.

Halavaty AS, Kim Y, Minasov G, Shuvalova L, Dubrovska I, Winsor J, Zhou M, Onopriyenko O, Skarina T, Papazisi L, Kwon K, Peterson SN, Joachimiak A, Savchenko A, Anderson WF.

Acta Crystallogr D Biol Crystallogr. 2012 Oct;68(Pt 10):1359-70. Epub 2012 Sep 13.


Studying Salmonellae and Yersiniae host-pathogen interactions using integrated 'omics and modeling.

Ansong C, Deatherage BL, Hyduke D, Schmidt B, McDermott JE, Jones MB, Chauhan S, Charusanti P, Kim YM, Nakayasu ES, Li J, Kidwai A, Niemann G, Brown RN, Metz TO, McAteer K, Heffron F, Peterson SN, Motin V, Palsson BO, Smith RD, Adkins JN.

Curr Top Microbiol Immunol. 2013;363:21-41. doi: 10.1007/82_2012_247. Review.


The auxiliary protein complex SaePQ activates the phosphatase activity of sensor kinase SaeS in the SaeRS two-component system of Staphylococcus aureus.

Jeong DW, Cho H, Jones MB, Shatzkes K, Sun F, Ji Q, Liu Q, Peterson SN, He C, Bae T.

Mol Microbiol. 2012 Oct;86(2):331-48. doi: 10.1111/j.1365-2958.2012.08198.x. Epub 2012 Aug 27.


Reduced expression of the rplU-rpmA ribosomal protein operon in mexXY-expressing pan-aminoglycoside-resistant mutants of pseudomonas aeruginosa.

Lau CH, Fraud S, Jones M, Peterson SN, Poole K.

Antimicrob Agents Chemother. 2012 Oct;56(10):5171-9. doi: 10.1128/AAC.00846-12. Epub 2012 Jul 23.


Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation.

Bordbar A, Mo ML, Nakayasu ES, Schrimpe-Rutledge AC, Kim YM, Metz TO, Jones MB, Frank BC, Smith RD, Peterson SN, Hyduke DR, Adkins JN, Palsson BO.

Mol Syst Biol. 2012 Jun 26;8:558. doi: 10.1038/msb.2012.21.

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