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Results: 14

1.

Cofactory: sequence-based prediction of cofactor specificity of Rossmann folds.

Geertz-Hansen HM, Blom N, Feist AM, Brunak S, Petersen TN.

Proteins. 2014 Sep;82(9):1819-28. doi: 10.1002/prot.24536. Epub 2014 Mar 20.

PMID:
24523134
[PubMed - in process]
2.

Prediction of disease causing non-synonymous SNPs by the Artificial Neural Network Predictor NetDiseaseSNP.

Johansen MB, Izarzugaza JM, Brunak S, Petersen TN, Gupta R.

PLoS One. 2013 Jul 25;8(7):e68370. doi: 10.1371/journal.pone.0068370. Print 2013.

PMID:
23935863
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

SignalP 4.0: discriminating signal peptides from transmembrane regions.

Petersen TN, Brunak S, von Heijne G, Nielsen H.

Nat Methods. 2011 Sep 29;8(10):785-6. doi: 10.1038/nmeth.1701. No abstract available.

PMID:
21959131
[PubMed - indexed for MEDLINE]
4.

A systematic study of site-specific GalNAc-type O-glycosylation modulating proprotein convertase processing.

Schjoldager KT, Vester-Christensen MB, Goth CK, Petersen TN, Brunak S, Bennett EP, Levery SB, Clausen H.

J Biol Chem. 2011 Nov 18;286(46):40122-32. doi: 10.1074/jbc.M111.287912. Epub 2011 Sep 20.

PMID:
21937429
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

NetTurnP--neural network prediction of beta-turns by use of evolutionary information and predicted protein sequence features.

Petersen B, Lundegaard C, Petersen TN.

PLoS One. 2010 Nov 30;5(11):e15079. doi: 10.1371/journal.pone.0015079.

PMID:
21152409
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

CPHmodels-3.0--remote homology modeling using structure-guided sequence profiles.

Nielsen M, Lundegaard C, Lund O, Petersen TN.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W576-81. doi: 10.1093/nar/gkq535. Epub 2010 Jun 11.

PMID:
20542909
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A generic method for assignment of reliability scores applied to solvent accessibility predictions.

Petersen B, Petersen TN, Andersen P, Nielsen M, Lundegaard C.

BMC Struct Biol. 2009 Jul 31;9:51. doi: 10.1186/1472-6807-9-51.

PMID:
19646261
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Midbrain expression of Delta-like 1 homologue is regulated by GDNF and is associated with dopaminergic differentiation.

Christophersen NS, Grønborg M, Petersen TN, Fjord-Larsen L, Jørgensen JR, Juliusson B, Blom N, Rosenblad C, Brundin P.

Exp Neurol. 2007 Apr;204(2):791-801. Epub 2007 Jan 24.

PMID:
17320866
[PubMed - indexed for MEDLINE]
9.

Identification of novel genes regulated in the developing human ventral mesencephalon.

Jørgensen JR, Juliusson B, Henriksen KF, Hansen C, Knudsen S, Petersen TN, Blom N, Seiger A, Wahlberg LU.

Exp Neurol. 2006 Apr;198(2):427-37. Epub 2006 Feb 10.

PMID:
16473350
[PubMed - indexed for MEDLINE]
10.

Prediction of protein secondary structure at 80% accuracy.

Petersen TN, Lundegaard C, Nielsen M, Bohr H, Bohr J, Brunak S, Gippert GP, Lund O.

Proteins. 2000 Oct 1;41(1):17-20.

PMID:
10944389
[PubMed - indexed for MEDLINE]
11.

The crystal structure of rhamnogalacturonase A from Aspergillus aculeatus: a right-handed parallel beta helix.

Petersen TN, Kauppinen S, Larsen S.

Structure. 1997 Apr 15;5(4):533-44.

PMID:
9115442
[PubMed - indexed for MEDLINE]
12.

Crystallization and preliminary X-ray studies of rhamnogalacturonase A from Aspergillus aculeatus.

Petersen TN, Christgau S, Kofod LV, Kauppinen S, Johnson AH, Larsen S.

Acta Crystallogr D Biol Crystallogr. 1997 Jan 1;53(Pt 1):105-7.

PMID:
15299976
[PubMed]
13.

Structure of porcine pancreatic spasmolytic polypeptide at 1.95 A resolution.

Petersen TN, Henriksen A, Gajhede M.

Acta Crystallogr D Biol Crystallogr. 1996 Jul 1;52(Pt 4):730-7.

PMID:
15299636
[PubMed]
14.

Pancreatic spasmolytic polypeptide: first three-dimensional structure of a member of the mammalian trefoil family of peptides.

Gajhede M, Petersen TN, Henriksen A, Petersen JF, Dauter Z, Wilson KS, Thim L.

Structure. 1993 Dec 15;1(4):253-62.

PMID:
8081739
[PubMed - indexed for MEDLINE]

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