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Results: 1 to 20 of 46

1.

Severe thoracic impalement injury: Survival in a case with delayed surgical definitive care.

Lunca S, Morosanu C, Alexa O, Pertea M.

Ulus Travma Acil Cerrahi Derg. 2015 Mar;21(2):152-6. doi: 10.5505/tjtes.2015.38354.

2.

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads.

Pertea M, Pertea GM, Antonescu CM, Chang TC, Mendell JT, Salzberg SL.

Nat Biotechnol. 2015 Mar;33(3):290-5. doi: 10.1038/nbt.3122. Epub 2015 Feb 18.

PMID:
25690850
3.

Broad CTL response is required to clear latent HIV-1 due to dominance of escape mutations.

Deng K, Pertea M, Rongvaux A, Wang L, Durand CM, Ghiaur G, Lai J, McHugh HL, Hao H, Zhang H, Margolick JB, Gurer C, Murphy AJ, Valenzuela DM, Yancopoulos GD, Deeks SG, Strowig T, Kumar P, Siliciano JD, Salzberg SL, Flavell RA, Shan L, Siliciano RF.

Nature. 2015 Jan 15;517(7534):381-5. doi: 10.1038/nature14053. Epub 2015 Jan 7.

PMID:
25561180
4.

DIAMUND: direct comparison of genomes to detect mutations.

Salzberg SL, Pertea M, Fahrner JA, Sobreira N.

Hum Mutat. 2014 Mar;35(3):283-8. doi: 10.1002/humu.22503.

5.

The human transcriptome: an unfinished story.

Pertea M.

Genes (Basel). 2012 Sep;3(3):344-60. doi: 10.3390/genes3030344.

6.

[Functional reeducation of flexor tendons with associated lesions in zone II--comparative study].

Topa I, Tamaş C, Perţea M, Stamate T.

Rev Med Chir Soc Med Nat Iasi. 2011 Jul-Sep;115(3):851-7. Romanian.

PMID:
22046798
7.

[Regeneration capacity of the peripheral nerve: experimental study--final results].

Perţea M, Luncă S.

Rev Med Chir Soc Med Nat Iasi. 2011 Apr-Jun;115(2):418-27. Romanian.

PMID:
21870734
8.

Detection of lineage-specific evolutionary changes among primate species.

Pertea M, Pertea GM, Salzberg SL.

BMC Bioinformatics. 2011 Jul 4;12:274. doi: 10.1186/1471-2105-12-274.

9.

Do-it-yourself genetic testing.

Salzberg SL, Pertea M.

Genome Biol. 2010;11(10):404. doi: 10.1186/gb-2010-11-10-404. Epub 2010 Oct 7.

10.

[Capacity for peripheral nerve regeneration. Experimental study--preliminary results].

Perţea M, Luncă S.

Rev Med Chir Soc Med Nat Iasi. 2010 Jan-Mar;114(1):135-41. Romanian.

PMID:
20509290
11.

Between a chicken and a grape: estimating the number of human genes.

Pertea M, Salzberg SL.

Genome Biol. 2010;11(5):206. doi: 10.1186/gb-2010-11-5-206. Epub 2010 May 5. Review.

12.

The genome of the blood fluke Schistosoma mansoni.

Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM.

Nature. 2009 Jul 16;460(7253):352-8. doi: 10.1038/nature08160.

13.

Sim4cc: a cross-species spliced alignment program.

Zhou L, Pertea M, Delcher AL, Florea L.

Nucleic Acids Res. 2009 Jun;37(11):e80. doi: 10.1093/nar/gkp319. Epub 2009 May 8.

14.

[Postmastectomy breast reconstruction--outcome on 33 consecutive cases].

Curic L, Azzena B, Bassetto F, Perţea M, Luncă S.

Rev Med Chir Soc Med Nat Iasi. 2009 Apr-Jun;113(2):453-8. Romanian.

PMID:
21495351
15.

OperonDB: a comprehensive database of predicted operons in microbial genomes.

Pertea M, Ayanbule K, Smedinghoff M, Salzberg SL.

Nucleic Acids Res. 2009 Jan;37(Database issue):D479-82. doi: 10.1093/nar/gkn784. Epub 2008 Oct 23.

16.

[Axillary wound with complete vasculo-nervous section. Functional outcomes].

Perţea M, Luncă S, Moroşanu C.

Rev Med Chir Soc Med Nat Iasi. 2008 Oct-Dec;112(4):999-1002. Romanian.

PMID:
20209776
17.

Using GlimmerM to find genes in eukaryotic genomes.

Pertea M, Salzberg SL.

Curr Protoc Bioinformatics. 2002 Nov;Chapter 4:Unit 4.4. doi: 10.1002/0471250953.bi0404s00.

PMID:
18792941
18.

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.

Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR.

Genome Biol. 2008 Jan 11;9(1):R7. doi: 10.1186/gb-2008-9-1-r7.

19.

Draft genome of the filarial nematode parasite Brugia malayi.

Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyum T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DM, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrín-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML, Scott AL.

Science. 2007 Sep 21;317(5845):1756-60.

20.
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