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Results: 1 to 20 of 43

1.

DIAMUND: direct comparison of genomes to detect mutations.

Salzberg SL, Pertea M, Fahrner JA, Sobreira N.

Hum Mutat. 2014 Mar;35(3):283-8. doi: 10.1002/humu.22503.

PMID:
24375697
[PubMed - in process]
2.

The human transcriptome: an unfinished story.

Pertea M.

Genes (Basel). 2012 Sep;3(3):344-60. doi: 10.3390/genes3030344.

PMID:
22916334
[PubMed]
Free PMC Article
3.

[Functional reeducation of flexor tendons with associated lesions in zone II--comparative study].

Topa I, Tamaş C, Perţea M, Stamate T.

Rev Med Chir Soc Med Nat Iasi. 2011 Jul-Sep;115(3):851-7. Romanian.

PMID:
22046798
[PubMed - indexed for MEDLINE]
4.

[Regeneration capacity of the peripheral nerve: experimental study--final results].

Perţea M, Luncă S.

Rev Med Chir Soc Med Nat Iasi. 2011 Apr-Jun;115(2):418-27. Romanian.

PMID:
21870734
[PubMed - indexed for MEDLINE]
5.

Detection of lineage-specific evolutionary changes among primate species.

Pertea M, Pertea GM, Salzberg SL.

BMC Bioinformatics. 2011 Jul 4;12:274. doi: 10.1186/1471-2105-12-274.

PMID:
21726447
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Do-it-yourself genetic testing.

Salzberg SL, Pertea M.

Genome Biol. 2010;11(10):404. doi: 10.1186/gb-2010-11-10-404. Epub 2010 Oct 7.

PMID:
20932271
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

[Capacity for peripheral nerve regeneration. Experimental study--preliminary results].

Perţea M, Luncă S.

Rev Med Chir Soc Med Nat Iasi. 2010 Jan-Mar;114(1):135-41. Romanian.

PMID:
20509290
[PubMed - indexed for MEDLINE]
8.

Between a chicken and a grape: estimating the number of human genes.

Pertea M, Salzberg SL.

Genome Biol. 2010;11(5):206. doi: 10.1186/gb-2010-11-5-206. Epub 2010 May 5. Review.

PMID:
20441615
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The genome of the blood fluke Schistosoma mansoni.

Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, Cerqueira GC, Mashiyama ST, Al-Lazikani B, Andrade LF, Ashton PD, Aslett MA, Bartholomeu DC, Blandin G, Caffrey CR, Coghlan A, Coulson R, Day TA, Delcher A, DeMarco R, Djikeng A, Eyre T, Gamble JA, Ghedin E, Gu Y, Hertz-Fowler C, Hirai H, Hirai Y, Houston R, Ivens A, Johnston DA, Lacerda D, Macedo CD, McVeigh P, Ning Z, Oliveira G, Overington JP, Parkhill J, Pertea M, Pierce RJ, Protasio AV, Quail MA, Rajandream MA, Rogers J, Sajid M, Salzberg SL, Stanke M, Tivey AR, White O, Williams DL, Wortman J, Wu W, Zamanian M, Zerlotini A, Fraser-Liggett CM, Barrell BG, El-Sayed NM.

Nature. 2009 Jul 16;460(7253):352-8. doi: 10.1038/nature08160.

PMID:
19606141
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Sim4cc: a cross-species spliced alignment program.

Zhou L, Pertea M, Delcher AL, Florea L.

Nucleic Acids Res. 2009 Jun;37(11):e80. doi: 10.1093/nar/gkp319. Epub 2009 May 8.

PMID:
19429899
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

[Postmastectomy breast reconstruction--outcome on 33 consecutive cases].

Curic L, Azzena B, Bassetto F, Perţea M, Luncă S.

Rev Med Chir Soc Med Nat Iasi. 2009 Apr-Jun;113(2):453-8. Romanian.

PMID:
21495351
[PubMed - indexed for MEDLINE]
12.

OperonDB: a comprehensive database of predicted operons in microbial genomes.

Pertea M, Ayanbule K, Smedinghoff M, Salzberg SL.

Nucleic Acids Res. 2009 Jan;37(Database issue):D479-82. doi: 10.1093/nar/gkn784. Epub 2008 Oct 23.

PMID:
18948284
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

[Axillary wound with complete vasculo-nervous section. Functional outcomes].

Perţea M, Luncă S, Moroşanu C.

Rev Med Chir Soc Med Nat Iasi. 2008 Oct-Dec;112(4):999-1002. Romanian.

PMID:
20209776
[PubMed - indexed for MEDLINE]
14.

Using GlimmerM to find genes in eukaryotic genomes.

Pertea M, Salzberg SL.

Curr Protoc Bioinformatics. 2002 Nov;Chapter 4:Unit 4.4. doi: 10.1002/0471250953.bi0404s00.

PMID:
18792941
[PubMed - indexed for MEDLINE]
15.

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments.

Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR.

Genome Biol. 2008 Jan 11;9(1):R7. doi: 10.1186/gb-2008-9-1-r7.

PMID:
18190707
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Draft genome of the filarial nematode parasite Brugia malayi.

Ghedin E, Wang S, Spiro D, Caler E, Zhao Q, Crabtree J, Allen JE, Delcher AL, Guiliano DB, Miranda-Saavedra D, Angiuoli SV, Creasy T, Amedeo P, Haas B, El-Sayed NM, Wortman JR, Feldblyum T, Tallon L, Schatz M, Shumway M, Koo H, Salzberg SL, Schobel S, Pertea M, Pop M, White O, Barton GJ, Carlow CK, Crawford MJ, Daub J, Dimmic MW, Estes CF, Foster JM, Ganatra M, Gregory WF, Johnson NM, Jin J, Komuniecki R, Korf I, Kumar S, Laney S, Li BW, Li W, Lindblom TH, Lustigman S, Ma D, Maina CV, Martin DM, McCarter JP, McReynolds L, Mitreva M, Nutman TB, Parkinson J, Peregrín-Alvarez JM, Poole C, Ren Q, Saunders L, Sluder AE, Smith K, Stanke M, Unnasch TR, Ware J, Wei AD, Weil G, Williams DJ, Zhang Y, Williams SA, Fraser-Liggett C, Slatko B, Blaxter ML, Scott AL.

Science. 2007 Sep 21;317(5845):1756-60.

PMID:
17885136
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana.

Pertea M, Mount SM, Salzberg SL.

BMC Bioinformatics. 2007 May 21;8:159.

PMID:
17517127
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome sequence of Aedes aegypti, a major arbovirus vector.

Nene V, Wortman JR, Lawson D, Haas B, Kodira C, Tu ZJ, Loftus B, Xi Z, Megy K, Grabherr M, Ren Q, Zdobnov EM, Lobo NF, Campbell KS, Brown SE, Bonaldo MF, Zhu J, Sinkins SP, Hogenkamp DG, Amedeo P, Arensburger P, Atkinson PW, Bidwell S, Biedler J, Birney E, Bruggner RV, Costas J, Coy MR, Crabtree J, Crawford M, Debruyn B, Decaprio D, Eiglmeier K, Eisenstadt E, El-Dorry H, Gelbart WM, Gomes SL, Hammond M, Hannick LI, Hogan JR, Holmes MH, Jaffe D, Johnston JS, Kennedy RC, Koo H, Kravitz S, Kriventseva EV, Kulp D, Labutti K, Lee E, Li S, Lovin DD, Mao C, Mauceli E, Menck CF, Miller JR, Montgomery P, Mori A, Nascimento AL, Naveira HF, Nusbaum C, O'leary S, Orvis J, Pertea M, Quesneville H, Reidenbach KR, Rogers YH, Roth CW, Schneider JR, Schatz M, Shumway M, Stanke M, Stinson EO, Tubio JM, Vanzee JP, Verjovski-Almeida S, Werner D, White O, Wyder S, Zeng Q, Zhao Q, Zhao Y, Hill CA, Raikhel AS, Soares MB, Knudson DL, Lee NH, Galagan J, Salzberg SL, Paulsen IT, Dimopoulos G, Collins FH, Birren B, Fraser-Liggett CM, Severson DW.

Science. 2007 Jun 22;316(5832):1718-23. Epub 2007 May 17.

PMID:
17510324
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis.

Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, Van de Peer Y, Miranda-Saavedra D, Barton GJ, Westrop GD, Müller S, Dessi D, Fiori PL, Ren Q, Paulsen I, Zhang H, Bastida-Corcuera FD, Simoes-Barbosa A, Brown MT, Hayes RD, Mukherjee M, Okumura CY, Schneider R, Smith AJ, Vanacova S, Villalvazo M, Haas BJ, Pertea M, Feldblyum TV, Utterback TR, Shu CL, Osoegawa K, de Jong PJ, Hrdy I, Horvathova L, Zubacova Z, Dolezal P, Malik SB, Logsdon JM Jr, Henze K, Gupta A, Wang CC, Dunne RL, Upcroft JA, Upcroft P, White O, Salzberg SL, Tang P, Chiu CH, Lee YS, Embley TM, Coombs GH, Mottram JC, Tachezy J, Fraser-Liggett CM, Johnson PJ.

Science. 2007 Jan 12;315(5809):207-12.

PMID:
17218520
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions.

Allen JE, Majoros WH, Pertea M, Salzberg SL.

Genome Biol. 2006;7 Suppl 1:S9.1-13. Epub 2006 Aug 7.

PMID:
16925843
[PubMed - indexed for MEDLINE]
Free PMC Article

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