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Results: 1 to 20 of 365

1.

Comparative analysis of the transcriptome across distant species.

Gerstein MB, Rozowsky J, Yan KK, Wang D, Cheng C, Brown JB, Davis CA, Hillier L, Sisu C, Li JJ, Pei B, Harmanci AO, Duff MO, Djebali S, Alexander RP, Alver BH, Auerbach R, Bell K, Bickel PJ, Boeck ME, Boley NP, Booth BW, Cherbas L, Cherbas P, Di C, Dobin A, Drenkow J, Ewing B, Fang G, Fastuca M, Feingold EA, Frankish A, Gao G, Good PJ, Guigó R, Hammonds A, Harrow J, Hoskins RA, Howald C, Hu L, Huang H, Hubbard TJ, Huynh C, Jha S, Kasper D, Kato M, Kaufman TC, Kitchen RR, Ladewig E, Lagarde J, Lai E, Leng J, Lu Z, MacCoss M, May G, McWhirter R, Merrihew G, Miller DM, Mortazavi A, Murad R, Oliver B, Olson S, Park PJ, Pazin MJ, Perrimon N, Pervouchine D, Reinke V, Reymond A, Robinson G, Samsonova A, Saunders GI, Schlesinger F, Sethi A, Slack FJ, Spencer WC, Stoiber MH, Strasbourger P, Tanzer A, Thompson OA, Wan KH, Wang G, Wang H, Watkins KL, Wen J, Wen K, Xue C, Yang L, Yip K, Zaleski C, Zhang Y, Zheng H, Brenner SE, Graveley BR, Celniker SE, Gingeras TR, Waterston R.

Nature. 2014 Aug 28;512(7515):445-8. doi: 10.1038/nature13424.

PMID:
25164755
[PubMed - in process]
2.

Spatial and temporal organization of signaling pathways.

Housden BE, Perrimon N.

Trends Biochem Sci. 2014 Aug 22. pii: S0968-0004(14)00130-3. doi: 10.1016/j.tibs.2014.07.008. [Epub ahead of print] Review.

PMID:
25155749
[PubMed - as supplied by publisher]
3.

RNAi screening comes of age: improved techniques and complementary approaches.

Mohr SE, Smith JA, Shamu CE, Neumüller RA, Perrimon N.

Nat Rev Mol Cell Biol. 2014 Aug 22;15(9):591-600. doi: 10.1038/nrm3860.

PMID:
25145850
[PubMed - in process]
4.

Online GESS: prediction of miRNA-like off-target effects in large-scale RNAi screen data by seed region analysis.

Yilmazel B, Hu Y, Sigoillot F, Smith JA, Shamu CE, Perrimon N, Mohr SE.

BMC Bioinformatics. 2014 Jun 17;15:192. doi: 10.1186/1471-2105-15-192.

PMID:
24934636
[PubMed - in process]
Free PMC Article
5.

A rapid genome-wide microRNA screen identifies miR-14 as a modulator of Hedgehog signaling.

Kim K, Vinayagam A, Perrimon N.

Cell Rep. 2014 Jun 26;7(6):2066-77. doi: 10.1016/j.celrep.2014.05.025. Epub 2014 Jun 12.

PMID:
24931604
[PubMed - in process]
Free Article
6.

Drosophila developmental biology methods.

Perrimon N.

Methods. 2014 Jun 15;68(1):1. doi: 10.1016/j.ymeth.2014.05.010. No abstract available.

PMID:
24908372
[PubMed - in process]
7.

Intertissue control of the nucleolus via a myokine-dependent longevity pathway.

Demontis F, Patel VK, Swindell WR, Perrimon N.

Cell Rep. 2014 Jun 12;7(5):1481-94. doi: 10.1016/j.celrep.2014.05.001. Epub 2014 May 29.

PMID:
24882005
[PubMed - in process]
Free Article
8.

Inducing RNAi in Drosophila cells by soaking with dsRNA.

Zhou R, Mohr S, Hannon GJ, Perrimon N.

Cold Spring Harb Protoc. 2014 May 1;2014(5). pii: pdb.prot080747. doi: 10.1101/pdb.prot080747.

PMID:
24786505
[PubMed - in process]
9.

Visualizing and manipulating temporal signaling dynamics with fluorescence-based tools.

Doupé DP, Perrimon N.

Sci Signal. 2014 Apr 1;7(319):re1. doi: 10.1126/scisignal.2005077.

PMID:
24692594
[PubMed - in process]
10.

Diversity and dynamics of the Drosophila transcriptome.

Brown JB, Boley N, Eisman R, May GE, Stoiber MH, Duff MO, Booth BW, Wen J, Park S, Suzuki AM, Wan KH, Yu C, Zhang D, Carlson JW, Cherbas L, Eads BD, Miller D, Mockaitis K, Roberts J, Davis CA, Frise E, Hammonds AS, Olson S, Shenker S, Sturgill D, Samsonova AA, Weiszmann R, Robinson G, Hernandez J, Andrews J, Bickel PJ, Carninci P, Cherbas P, Gingeras TR, Hoskins RA, Kaufman TC, Lai EC, Oliver B, Perrimon N, Graveley BR, Celniker SE.

Nature. 2014 Mar 16;512(7515):393-399. doi: 10.1038/nature12962. [Epub ahead of print]

PMID:
24670639
[PubMed - as supplied by publisher]
11.

Resources for functional genomics studies in Drosophila melanogaster.

Mohr SE, Hu Y, Kim K, Housden BE, Perrimon N.

Genetics. 2014 May;197(1):1-18. doi: 10.1534/genetics.113.154344. Epub 2014 Mar 20.

PMID:
24653003
[PubMed - in process]
12.

Genetic odyssey to generate marked clones in Drosophila mosaics.

Griffin R, Binari R, Perrimon N.

Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4756-63. doi: 10.1073/pnas.1403218111. Epub 2014 Mar 12. Review.

PMID:
24623854
[PubMed - indexed for MEDLINE]
13.

Systematic screen of chemotherapeutics in Drosophila stem cell tumors.

Markstein M, Dettorre S, Cho J, Neumüller RA, Craig-Müller S, Perrimon N.

Proc Natl Acad Sci U S A. 2014 Mar 25;111(12):4530-5. doi: 10.1073/pnas.1401160111. Epub 2014 Mar 10.

PMID:
24616500
[PubMed - indexed for MEDLINE]
14.

Modeling metabolic homeostasis and nutrient sensing in Drosophila: implications for aging and metabolic diseases.

Owusu-Ansah E, Perrimon N.

Dis Model Mech. 2014 Mar;7(3):343-50. doi: 10.1242/dmm.012989.

PMID:
24609035
[PubMed - in process]
Free PMC Article
15.

A regulatory network of Drosophila germline stem cell self-renewal.

Yan D, Neumüller RA, Buckner M, Ayers K, Li H, Hu Y, Yang-Zhou D, Pan L, Wang X, Kelley C, Vinayagam A, Binari R, Randklev S, Perkins LA, Xie T, Cooley L, Perrimon N.

Dev Cell. 2014 Feb 24;28(4):459-73. doi: 10.1016/j.devcel.2014.01.020.

PMID:
24576427
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

PPIRank - an advanced method for ranking protein-protein interations in TAP/MS data.

Sun X, Hong P, Kulkarni M, Kwon Y, Perrimon N.

Proteome Sci. 2013 Nov 7;11(Suppl 1):S16. doi: 10.1186/1477-5956-11-S1-S16. Epub 2013 Nov 7.

PMID:
24565074
[PubMed]
Free PMC Article
17.

Defining the interorgan communication network: systemic coordination of organismal cellular processes under homeostasis and localized stress.

Droujinine IA, Perrimon N.

Front Cell Infect Microbiol. 2013 Nov 19;3:82. doi: 10.3389/fcimb.2013.00082. eCollection 2013. Review. No abstract available.

PMID:
24312902
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Role of autophagy in glycogen breakdown and its relevance to chloroquine myopathy.

Zirin J, Nieuwenhuis J, Perrimon N.

PLoS Biol. 2013 Nov;11(11):e1001708. doi: 10.1371/journal.pbio.1001708. Epub 2013 Nov 12.

PMID:
24265594
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Muscle mitohormesis promotes longevity via systemic repression of insulin signaling.

Owusu-Ansah E, Song W, Perrimon N.

Cell. 2013 Oct 24;155(3):699-712. doi: 10.1016/j.cell.2013.09.021. Epub 2013 Oct 24.

PMID:
24243023
[PubMed - indexed for MEDLINE]
20.

Integrating protein-protein interaction networks with phenotypes reveals signs of interactions.

Vinayagam A, Zirin J, Roesel C, Hu Y, Yilmazel B, Samsonova AA, Neumüller RA, Mohr SE, Perrimon N.

Nat Methods. 2014 Jan;11(1):94-9. doi: 10.1038/nmeth.2733. Epub 2013 Nov 17.

PMID:
24240319
[PubMed - indexed for MEDLINE]
Free PMC Article

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