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Results: 1 to 20 of 54


Text mining of biomedical literature: doing well, but we could be doing better.

Andrade-Navarro M, Perez-Iratxeta C.

Methods. 2015 Mar;74:1-2. doi: 10.1016/j.ymeth.2015.01.014. No abstract available.


Assessment of curated phenotype mining in neuropsychiatric disorder literature.

Fontaine JF, Priller J, Spruth E, Perez-Iratxeta C, Andrade-Navarro MA.

Methods. 2015 Mar;74:90-6. doi: 10.1016/j.ymeth.2014.11.022. Epub 2014 Dec 5.


Autophagy supports genomic stability by degrading retrotransposon RNA.

Guo H, Chitiprolu M, Gagnon D, Meng L, Perez-Iratxeta C, Lagace D, Gibbings D.

Nat Commun. 2014 Nov 4;5:5276. doi: 10.1038/ncomms6276.


Trichostatin A enhances vascular repair by injected human endothelial progenitors through increasing the expression of TAL1-dependent genes.

Palii CG, Vulesevic B, Fraineau S, Pranckeviciene E, Griffith AJ, Chu A, Faralli H, Li Y, McNeill B, Sun J, Perkins TJ, Dilworth FJ, Perez-Iratxeta C, Suuronen EJ, Allan DS, Brand M.

Cell Stem Cell. 2014 May 1;14(5):644-57. doi: 10.1016/j.stem.2014.03.003.


Proteomic analysis implicates translationally controlled tumor protein as a novel mediator of occlusive vascular remodeling in pulmonary arterial hypertension.

Lavoie JR, Ormiston ML, Perez-Iratxeta C, Courtman DW, Jiang B, Ferrer E, Caruso P, Southwood M, Foster WS, Morrell NW, Stewart DJ.

Circulation. 2014 May 27;129(21):2125-35. doi: 10.1161/CIRCULATIONAHA.114.008777. Epub 2014 Mar 21.


17β-estradiol upregulates GREB1 and accelerates ovarian tumor progression in vivo.

Laviolette LA, Hodgkinson KM, Minhas N, Perez-Iratxeta C, Vanderhyden BC.

Int J Cancer. 2014 Sep 1;135(5):1072-84. doi: 10.1002/ijc.28741. Epub 2014 Feb 25.


Functional and genomic analyses of alpha-solenoid proteins.

Fournier D, Palidwor GA, Shcherbinin S, Szengel A, Schaefer MH, Perez-Iratxeta C, Andrade-Navarro MA.

PLoS One. 2013 Nov 21;8(11):e79894. doi: 10.1371/journal.pone.0079894. eCollection 2013.


A method for cell type marker discovery by high-throughput gene expression analysis of mixed cell populations.

Andrade-Navarro MA, Kanji F, Palii CG, Brand M, Atkins H, Perez-Iratxeta C.

BMC Biotechnol. 2013 Oct 3;13:80. doi: 10.1186/1472-6750-13-80.


The imitation switch ATPase Snf2l is required for superovulation and regulates Fgl2 in differentiating mouse granulosa cells.

Pépin D, Paradis F, Perez-Iratxeta C, Picketts DJ, Vanderhyden BC.

Biol Reprod. 2013 Jun 6;88(6):142. doi: 10.1095/biolreprod.112.105742. Print 2013 Jun.


Adding protein context to the human protein-protein interaction network to reveal meaningful interactions.

Schaefer MH, Lopes TJ, Mah N, Shoemaker JE, Matsuoka Y, Fontaine JF, Louis-Jeune C, Eisfeld AJ, Neumann G, Perez-Iratxeta C, Kawaoka Y, Kitano H, Andrade-Navarro MA.

PLoS Comput Biol. 2013;9(1):e1002860. doi: 10.1371/journal.pcbi.1002860. Epub 2013 Jan 3.


Peer2ref: a peer-reviewer finding web tool that uses author disambiguation.

Andrade-Navarro MA, Palidwor GA, Perez-Iratxeta C.

BioData Min. 2012 Sep 7;5(1):14. doi: 10.1186/1756-0381-5-14.


Comparative expression profiling identifies differential roles for Myogenin and p38α MAPK signaling in myogenesis.

Liu QC, Zha XH, Faralli H, Yin H, Louis-Jeune C, Perdiguero E, Pranckeviciene E, Muñoz-Cànoves P, Rudnicki MA, Brand M, Perez-Iratxeta C, Dilworth FJ.

J Mol Cell Biol. 2012 Dec;4(6):386-97. doi: 10.1093/jmcb/mjs045. Epub 2012 Jul 30.


Identification of Wnt/β-catenin modulated genes in the developing retina.

Ha A, Perez-Iratxeta C, Liu H, Mears AJ, Wallace VA.

Mol Vis. 2012;18:645-56. Epub 2012 Mar 16.


Comparative genomics identification of a novel set of temporally regulated hedgehog target genes in the retina.

McNeill B, Perez-Iratxeta C, Mazerolle C, Furimsky M, Mishina Y, Andrade-Navarro MA, Wallace VA.

Mol Cell Neurosci. 2012 Mar;49(3):333-40. doi: 10.1016/j.mcn.2011.12.008. Epub 2012 Jan 16.


Prediction of protein secondary structure from circular dichroism using theoretically derived spectra.

Louis-Jeune C, Andrade-Navarro MA, Perez-Iratxeta C.

Proteins. 2012 Feb;80(2):374-81. doi: 10.1002/prot.23188. Epub 2011 Nov 17.


Constitutive heterochromatin reorganization during somatic cell reprogramming.

Fussner E, Djuric U, Strauss M, Hotta A, Perez-Iratxeta C, Lanner F, Dilworth FJ, Ellis J, Bazett-Jones DP.

EMBO J. 2011 May 4;30(9):1778-89. doi: 10.1038/emboj.2011.96. Epub 2011 Apr 5.


Quantitative proteomic analysis of dystrophic dog muscle.

Guevel L, Lavoie JR, Perez-Iratxeta C, Rouger K, Dubreil L, Feron M, Talon S, Brand M, Megeney LA.

J Proteome Res. 2011 May 6;10(5):2465-78. doi: 10.1021/pr2001385. Epub 2011 Mar 29.


Differential genomic targeting of the transcription factor TAL1 in alternate haematopoietic lineages.

Palii CG, Perez-Iratxeta C, Yao Z, Cao Y, Dai F, Davison J, Atkins H, Allan D, Dilworth FJ, Gentleman R, Tapscott SJ, Brand M.

EMBO J. 2011 Feb 2;30(3):494-509. doi: 10.1038/emboj.2010.342. Epub 2010 Dec 21.


miRNA-132 orchestrates chromatin remodeling and translational control of the circadian clock.

Alvarez-Saavedra M, Antoun G, Yanagiya A, Oliva-Hernandez R, Cornejo-Palma D, Perez-Iratxeta C, Sonenberg N, Cheng HY.

Hum Mol Genet. 2011 Feb 15;20(4):731-51. doi: 10.1093/hmg/ddq519. Epub 2010 Nov 30.


Outer membrane pore protein prediction in mycobacteria using genomic comparison.

Mah N, Perez-Iratxeta C, Andrade-Navarro MA.

Microbiology. 2010 Aug;156(Pt 8):2506-15. doi: 10.1099/mic.0.040089-0. Epub 2010 May 13.

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