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Results: 1 to 20 of 119

1.

Where are we at regarding species translation? A review of the sbv IMPROVER challenge.

Hoeng J, Peitsch MC, Meyer P, Jurisica I.

Bioinformatics. 2015 Feb 15;31(4):451-452. Epub 2015 Jan 31.

PMID:
25638813
[PubMed - as supplied by publisher]
2.

Reputation-based collaborative network biology.

Binder J, Boue S, DI Fabio A, Fields RB, Hayes W, Hoeng J, Park JS, Peitsch MC.

Pac Symp Biocomput. 2015;20:270-81.

PMID:
25592588
[PubMed - in process]
Free Article
3.

Characterization of the Vitrocell® 24/48 in vitro aerosol exposure system using mainstream cigarette smoke.

Majeed S, Frentzel S, Wagner S, Kuehn D, Leroy P, Guy PA, Knorr A, Hoeng J, Peitsch MC.

Chem Cent J. 2014 Nov 12;8(1):62. doi: 10.1186/s13065-014-0062-3. eCollection 2014.

PMID:
25411580
[PubMed]
Free PMC Article
4.

Proteomics for systems toxicology.

Titz B, Elamin A, Martin F, Schneider T, Dijon S, Ivanov NV, Hoeng J, Peitsch MC.

Comput Struct Biotechnol J. 2014 Aug 27;11(18):73-90. doi: 10.1016/j.csbj.2014.08.004. eCollection 2014 Aug. Review.

PMID:
25379146
[PubMed]
Free PMC Article
5.

The response of human nasal and bronchial organotypic tissue cultures to repeated whole cigarette smoke exposure.

Talikka M, Kostadinova R, Xiang Y, Mathis C, Sewer A, Majeed S, Kuehn D, Frentzel S, Merg C, Geertz M, Martin F, Ivanov NV, Peitsch MC, Hoeng J.

Int J Toxicol. 2014 Nov-Dec;33(6):506-17. doi: 10.1177/1091581814551647. Epub 2014 Oct 8.

PMID:
25297719
[PubMed - in process]
6.

A crowd-sourcing approach for the construction of species-specific cell signaling networks.

Bilal E, Sakellaropoulos T, Participants C, Melas IN, Messinis DE, Belcastro V, Rhrissorrakrai K, Meyer P, Norel R, Iskandar A, Blaese E, Rice JJ, Peitsch MC, Hoeng J, Stolovitzky G, Alexopoulos LG, Poussin C.

Bioinformatics. 2015 Feb 15;31(4):484-91. doi: 10.1093/bioinformatics/btu659. Epub 2014 Oct 7.

PMID:
25294919
[PubMed - in process]
Free Article
7.

Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge.

Rhrissorrakrai K, Belcastro V, Bilal E, Norel R, Poussin C, Mathis C, Dulize RH, Ivanov NV, Alexopoulos L, Jeremy Rice J, Peitsch MC, Stolovitzky G, Meyer P, Hoeng J.

Bioinformatics. 2015 Feb 15;31(4):471-83. doi: 10.1093/bioinformatics/btu611. Epub 2014 Sep 17.

PMID:
25236459
[PubMed - in process]
Free Article
8.

CSEO - the Cigarette Smoke Exposure Ontology.

Younesi E, Ansari S, Guendel M, Ahmadi S, Coggins C, Hoeng J, Hofmann-Apitius M, Peitsch MC.

J Biomed Semantics. 2014 Jul 10;5:31. doi: 10.1186/2041-1480-5-31. eCollection 2014.

PMID:
25093069
[PubMed]
Free PMC Article
9.

In vitro systems toxicology approach to investigate the effects of repeated cigarette smoke exposure on human buccal and gingival organotypic epithelial tissue cultures.

Schlage WK, Iskandar AR, Kostadinova R, Xiang Y, Sewer A, Majeed S, Kuehn D, Frentzel S, Talikka M, Geertz M, Mathis C, Ivanov N, Hoeng J, Peitsch MC.

Toxicol Mech Methods. 2014 Oct;24(7):470-87. doi: 10.3109/15376516.2014.943441. Epub 2014 Sep 11.

PMID:
25046638
[PubMed - in process]
Free PMC Article
10.

Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models.

Martin F, Sewer A, Talikka M, Xiang Y, Hoeng J, Peitsch MC.

BMC Bioinformatics. 2014 Jul 11;15:238. doi: 10.1186/1471-2105-15-238.

PMID:
25015298
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A vascular biology network model focused on inflammatory processes to investigate atherogenesis and plaque instability.

De León H, Boué S, Schlage WK, Boukharov N, Westra JW, Gebel S, VanHooser A, Talikka M, Fields RB, Veljkovic E, Peck MJ, Mathis C, Hoang V, Poussin C, Deehan R, Stolle K, Hoeng J, Peitsch MC.

J Transl Med. 2014 Jun 26;12:185. doi: 10.1186/1479-5876-12-185.

PMID:
24965703
[PubMed - in process]
Free PMC Article
12.

Assessment of a novel multi-array normalization method based on spike-in control probes suitable for microRNA datasets with global decreases in expression.

Sewer A, Gubian S, Kogel U, Veljkovic E, Han W, Hengstermann A, Peitsch MC, Hoeng J.

BMC Res Notes. 2014 May 17;7:302. doi: 10.1186/1756-0500-7-302.

PMID:
24886675
[PubMed - in process]
Free PMC Article
13.

The tobacco genome sequence and its comparison with those of tomato and potato.

Sierro N, Battey JN, Ouadi S, Bakaher N, Bovet L, Willig A, Goepfert S, Peitsch MC, Ivanov NV.

Nat Commun. 2014 May 8;5:3833. doi: 10.1038/ncomms4833.

PMID:
24807620
[PubMed - in process]
Free PMC Article
14.

Mechanism of an indirect effect of aqueous cigarette smoke extract on the adhesion of monocytic cells to endothelial cells in an in vitro assay revealed by transcriptomics analysis.

Poussin C, Gallitz I, Schlage WK, Steffen Y, Stolle K, Lebrun S, Hoeng J, Peitsch MC, Lietz M.

Toxicol In Vitro. 2014 Aug;28(5):896-908. doi: 10.1016/j.tiv.2014.03.005. Epub 2014 Apr 18.

PMID:
24747719
[PubMed - indexed for MEDLINE]
Free Article
15.

A 28-day rat inhalation study with an integrated molecular toxicology endpoint demonstrates reduced exposure effects for a prototypic modified risk tobacco product compared with conventional cigarettes.

Kogel U, Schlage WK, Martin F, Xiang Y, Ansari S, Leroy P, Vanscheeuwijck P, Gebel S, Buettner A, Wyss C, Esposito M, Hoeng J, Peitsch MC.

Food Chem Toxicol. 2014 Jun;68:204-17. doi: 10.1016/j.fct.2014.02.034. Epub 2014 Mar 12.

PMID:
24632068
[PubMed - indexed for MEDLINE]
Free Article
16.

Discovery of Emphysema Relevant Molecular Networks from an A/J Mouse Inhalation Study Using Reverse Engineering and Forward Simulation (REFS™).

Xiang Y, Kogel U, Gebel S, Peck MJ, Peitsch MC, Akmaev VR, Hoeng J.

Gene Regul Syst Bio. 2014 Feb 19;8:45-61. doi: 10.4137/GRSB.S13140. eCollection 2014.

PMID:
24596455
[PubMed]
Free PMC Article
17.

Systems toxicology: from basic research to risk assessment.

Sturla SJ, Boobis AR, FitzGerald RE, Hoeng J, Kavlock RJ, Schirmer K, Whelan M, Wilks MF, Peitsch MC.

Chem Res Toxicol. 2014 Mar 17;27(3):314-29. doi: 10.1021/tx400410s. Epub 2014 Jan 21.

PMID:
24446777
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Systems biology approach for evaluating the biological impact of environmental toxicants in vitro.

Gonzalez-Suarez I, Sewer A, Walker P, Mathis C, Ellis S, Woodhouse H, Guedj E, Dulize R, Marescotti D, Acali S, Martin F, Ivanov NV, Hoeng J, Peitsch MC.

Chem Res Toxicol. 2014 Mar 17;27(3):367-76. doi: 10.1021/tx400405s. Epub 2014 Jan 30.

PMID:
24428674
[PubMed - indexed for MEDLINE]
19.

Systems approaches evaluating the perturbation of xenobiotic metabolism in response to cigarette smoke exposure in nasal and bronchial tissues.

Iskandar AR, Martin F, Talikka M, Schlage WK, Kostadinova R, Mathis C, Hoeng J, Peitsch MC.

Biomed Res Int. 2013;2013:512086. doi: 10.1155/2013/512086. Epub 2013 Oct 3.

PMID:
24224167
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

On Crowd-verification of Biological Networks.

sbv IMPROVER project team (in alphabetical order), Ansari S, Binder J, Boue S, Di Fabio A, Hayes W, Hoeng J, Iskandar A, Kleiman R, Norel R, O'Neel B, Peitsch MC, Poussin C, Pratt D, Rhrissorrakrai K, Schlage WK, Stolovitzky G, Talikka M.

Bioinform Biol Insights. 2013 Oct 10;7:307-25. doi: 10.4137/BBI.S12932. eCollection 2013.

PMID:
24151423
[PubMed]
Free PMC Article
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