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Results: 1 to 20 of 41

1.

miR-217 is an oncogene that enhances the germinal center reaction.

de Yébenes VG, Bartolomé-Izquierdo N, Nogales-Cadenas R, Pérez-Durán P, Mur SM, Martínez N, Di Lisio L, Robbiani DF, Pascual-Montano A, Cañamero M, Piris MA, Ramiro AR.

Blood. 2014 Jul 10;124(2):229-39. doi: 10.1182/blood-2013-12-543611. Epub 2014 May 21.

PMID:
24850757
[PubMed - in process]
2.

Sumoylated hnRNPA2B1 controls the sorting of miRNAs into exosomes through binding to specific motifs.

Villarroya-Beltri C, Gutiérrez-Vázquez C, Sánchez-Cabo F, Pérez-Hernández D, Vázquez J, Martin-Cofreces N, Martinez-Herrera DJ, Pascual-Montano A, Mittelbrunn M, Sánchez-Madrid F.

Nat Commun. 2013;4:2980. doi: 10.1038/ncomms3980.

PMID:
24356509
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

CentrosomeDB: a new generation of the centrosomal proteins database for Human and Drosophila melanogaster.

Alves-Cruzeiro JM, Nogales-Cadenas R, Pascual-Montano AD.

Nucleic Acids Res. 2014 Jan;42(Database issue):D430-6. doi: 10.1093/nar/gkt1126. Epub 2013 Nov 21.

PMID:
24270791
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Surfing transcriptomic landscapes. A step beyond the annotation of chromosome 16 proteome.

Segura V, Medina-Aunon JA, Mora MI, Martínez-Bartolomé S, Abian J, Aloria K, Antúnez O, Arizmendi JM, Azkargorta M, Barceló-Batllori S, Beaskoetxea J, Bech-Serra JJ, Blanco F, Monteiro MB, Cáceres D, Canals F, Carrascal M, Casal JI, Clemente F, Colomé N, Dasilva N, Díaz P, Elortza F, Fernández-Puente P, Fuentes M, Gallardo O, Gharbi SI, Gil C, González-Tejedo C, Hernáez ML, Lombardía M, Lopez-Lucendo M, Marcilla M, Mato JM, Mendes M, Oliveira E, Orera I, Pascual-Montano A, Prieto G, Ruiz-Romero C, Sánchez del Pino MM, Tabas-Madrid D, Valero ML, Vialas V, Villanueva J, Albar JP, Corrales FJ.

J Proteome Res. 2014 Jan 3;13(1):158-72. doi: 10.1021/pr400721r. Epub 2013 Nov 5.

PMID:
24138474
[PubMed - indexed for MEDLINE]
5.

Unraveling a novel transcription factor code determining the human arterial-specific endothelial cell signature.

Aranguren XL, Agirre X, Beerens M, Coppiello G, Uriz M, Vandersmissen I, Benkheil M, Panadero J, Aguado N, Pascual-Montano A, Segura V, Prósper F, Luttun A.

Blood. 2013 Dec 5;122(24):3982-92. doi: 10.1182/blood-2013-02-483255. Epub 2013 Oct 9.

PMID:
24108462
[PubMed - indexed for MEDLINE]
6.

Chromothripsis: breakage-fusion-bridge over and over again.

Sorzano CO, Pascual-Montano A, Sánchez de Diego A, Martínez-A C, van Wely KH.

Cell Cycle. 2013 Jul 1;12(13):2016-23. doi: 10.4161/cc.25266. Epub 2013 Jun 11.

PMID:
23759584
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

3DEM Loupe: Analysis of macromolecular dynamics using structures from electron microscopy.

Nogales-Cadenas R, Jonic S, Tama F, Arteni AA, Tabas-Madrid D, Vázquez M, Pascual-Montano A, Sorzano CO.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W363-7. doi: 10.1093/nar/gkt385. Epub 2013 May 13.

PMID:
23671335
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

MicroRNAs control the maintenance of thymic epithelia and their competence for T lineage commitment and thymocyte selection.

Zuklys S, Mayer CE, Zhanybekova S, Stefanski HE, Nusspaumer G, Gill J, Barthlott T, Chappaz S, Nitta T, Dooley J, Nogales-Cadenas R, Takahama Y, Finke D, Liston A, Blazar BR, Pascual-Montano A, Holländer GA.

J Immunol. 2012 Oct 15;189(8):3894-904. doi: 10.4049/jimmunol.1200783. Epub 2012 Sep 12.

PMID:
22972926
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

GeneCodis3: a non-redundant and modular enrichment analysis tool for functional genomics.

Tabas-Madrid D, Nogales-Cadenas R, Pascual-Montano A.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W478-83. doi: 10.1093/nar/gks402. Epub 2012 May 9.

PMID:
22573175
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Quantification of miRNA-mRNA interactions.

Muniategui A, Nogales-Cadenas R, Vázquez M, Aranguren XL, Agirre X, Luttun A, Prosper F, Pascual-Montano A, Rubio A.

PLoS One. 2012;7(2):e30766. doi: 10.1371/journal.pone.0030766. Epub 2012 Feb 14.

PMID:
22348024
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

Kano Y, Björne J, Ginter F, Salakoski T, Buyko E, Hahn U, Cohen KB, Verspoor K, Roeder C, Hunter LE, Kilicoglu H, Bergler S, Van Landeghem S, Van Parys T, Van de Peer Y, Miwa M, Ananiadou S, Neves M, Pascual-Montano A, Özgür A, Radev DR, Riedel S, Sætre R, Chun HW, Kim JD, Pyysalo S, Ohta T, Tsujii J.

BMC Bioinformatics. 2011 Dec 18;12:481. doi: 10.1186/1471-2105-12-481.

PMID:
22177292
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.

Rebholz-Schuhmann D, Jimeno Yepes A, Li C, Kafkas S, Lewin I, Kang N, Corbett P, Milward D, Buyko E, Beisswanger E, Hornbostel K, Kouznetsov A, Witte R, Laurila JB, Baker CJ, Kuo CJ, Clematide S, Rinaldi F, Farkas R, Móra G, Hara K, Furlong LI, Rautschka M, Neves ML, Pascual-Montano A, Wei Q, Collier N, Chowdhury MF, Lavelli A, Berlanga R, Morante R, Van Asch V, Daelemans W, Marina JL, van Mulligen E, Kors J, Hahn U.

J Biomed Semantics. 2011 Oct 6;2 Suppl 5:S11. doi: 10.1186/2041-1480-2-S5-S11.

PMID:
22166494
[PubMed]
Free PMC Article
13.

Functional analysis beyond enrichment: non-redundant reciprocal linkage of genes and biological terms.

Fontanillo C, Nogales-Cadenas R, Pascual-Montano A, De las Rivas J.

PLoS One. 2011;6(9):e24289. doi: 10.1371/journal.pone.0024289. Epub 2011 Sep 16.

PMID:
21949701
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

MARQ: an online tool to mine GEO for experiments with similar or opposite gene expression signatures.

Vazquez M, Nogales-Cadenas R, Arroyo J, Botías P, García R, Carazo JM, Tirado F, Pascual-Montano A, Carmona-Saez P.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W228-32. doi: 10.1093/nar/gkq476. Epub 2010 May 31.

PMID:
20513648
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.

Medina I, Carbonell J, Pulido L, Madeira SC, Goetz S, Conesa A, Tárraga J, Pascual-Montano A, Nogales-Cadenas R, Santoyo J, García F, Marbà M, Montaner D, Dopazo J.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W210-3. doi: 10.1093/nar/gkq388. Epub 2010 May 16.

PMID:
20478823
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Moara: a Java library for extracting and normalizing gene and protein mentions.

Neves ML, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2010 Mar 26;11:157. doi: 10.1186/1471-2105-11-157.

PMID:
20346105
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Proteopathogen, a protein database for studying Candida albicans--host interaction.

Vialás V, Nogales-Cadenas R, Nombela C, Pascual-Montano A, Gil C.

Proteomics. 2009 Oct;9(20):4664-8. doi: 10.1002/pmic.200900023.

PMID:
19743419
[PubMed - indexed for MEDLINE]
18.

GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information.

Nogales-Cadenas R, Carmona-Saez P, Vazquez M, Vicente C, Yang X, Tirado F, Carazo JM, Pascual-Montano A.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W317-22. doi: 10.1093/nar/gkp416. Epub 2009 May 22.

PMID:
19465387
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

SENT: semantic features in text.

Vazquez M, Carmona-Saez P, Nogales-Cadenas R, Chagoyen M, Tirado F, Carazo JM, Pascual-Montano A.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W153-9. doi: 10.1093/nar/gkp392. Epub 2009 May 20.

PMID:
19458159
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Comparison of molecular dynamics and superfamily spaces of protein domain deformation.

Velázquez-Muriel JA, Rueda M, Cuesta I, Pascual-Montano A, Orozco M, Carazo JM.

BMC Struct Biol. 2009 Feb 17;9:6. doi: 10.1186/1472-6807-9-6.

PMID:
19220918
[PubMed - indexed for MEDLINE]
Free PMC Article

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