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Development of a targeted metagenomic approach to study a genomic region involved in light harvesting in marine Synechococcus.

Humily F, Farrant GK, Marie D, Partensky F, Mazard S, Perennou M, Labadie K, Aury JM, Wincker P, Segui AN, Scanlan DJ, Garczarek L.

FEMS Microbiol Ecol. 2014 May;88(2):231-49. doi: 10.1111/1574-6941.12285. Epub 2014 Feb 24.


A gene island with two possible configurations is involved in chromatic acclimation in marine Synechococcus.

Humily F, Partensky F, Six C, Farrant GK, Ratin M, Marie D, Garczarek L.

PLoS One. 2013 Dec 31;8(12):e84459. doi: 10.1371/journal.pone.0084459. eCollection 2013.


Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.

Collén J, Porcel B, Carré W, Ball SG, Chaparro C, Tonon T, Barbeyron T, Michel G, Noel B, Valentin K, Elias M, Artiguenave F, Arun A, Aury JM, Barbosa-Neto JF, Bothwell JH, Bouget FY, Brillet L, Cabello-Hurtado F, Capella-Gutiérrez S, Charrier B, Cladière L, Cock JM, Coelho SM, Colleoni C, Czjzek M, Da Silva C, Delage L, Denoeud F, Deschamps P, Dittami SM, Gabaldón T, Gachon CM, Groisillier A, Hervé C, Jabbari K, Katinka M, Kloareg B, Kowalczyk N, Labadie K, Leblanc C, Lopez PJ, McLachlan DH, Meslet-Cladiere L, Moustafa A, Nehr Z, Nyvall Collén P, Panaud O, Partensky F, Poulain J, Rensing SA, Rousvoal S, Samson G, Symeonidi A, Weissenbach J, Zambounis A, Wincker P, Boyen C.

Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5247-52. doi: 10.1073/pnas.1221259110. Epub 2013 Mar 15.


CyanoLyase: a database of phycobilin lyase sequences, motifs and functions.

Bretaudeau A, Coste F, Humily F, Garczarek L, Le Corguillé G, Six C, Ratin M, Collin O, Schluchter WM, Partensky F.

Nucleic Acids Res. 2013 Jan;41(Database issue):D396-401. doi: 10.1093/nar/gks1091. Epub 2012 Nov 21.


Phycoerythrin-specific bilin lyase-isomerase controls blue-green chromatic acclimation in marine Synechococcus.

Shukla A, Biswas A, Blot N, Partensky F, Karty JA, Hammad LA, Garczarek L, Gutu A, Schluchter WM, Kehoe DM.

Proc Natl Acad Sci U S A. 2012 Dec 4;109(49):20136-41. doi: 10.1073/pnas.1211777109. Epub 2012 Nov 16.


Prochlorococcus and Synechococcus have Evolved Different Adaptive Mechanisms to Cope with Light and UV Stress.

Mella-Flores D, Six C, Ratin M, Partensky F, Boutte C, Le Corguillé G, Marie D, Blot N, Gourvil P, Kolowrat C, Garczarek L.

Front Microbiol. 2012 Aug 8;3:285. eCollection 2012.


Ecological and evolutionary genomics of marine photosynthetic organisms.

Coelho SM, Simon N, Ahmed S, Cock JM, Partensky F.

Mol Ecol. 2013 Feb;22(3):867-907. doi: 10.1111/mec.12000. Epub 2012 Sep 18. Review.


Complex microbiome underlying secondary and primary metabolism in the tunicate-Prochloron symbiosis.

Donia MS, Fricke WF, Partensky F, Cox J, Elshahawi SI, White JR, Phillippy AM, Schatz MC, Piel J, Haygood MG, Ravel J, Schmidt EW.

Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):E1423-32. doi: 10.1073/pnas.1111712108. Epub 2011 Nov 28.


Microbiology: Arms race in a drop of sea water.

Partensky F, Garczarek L.

Nature. 2011 Jun 29;474(7353):582-3. doi: 10.1038/474582a. No abstract available.


Multi-locus sequence analysis, taxonomic resolution and biogeography of marine Synechococcus.

Mazard S, Ostrowski M, Partensky F, Scanlan DJ.

Environ Microbiol. 2012 Feb;14(2):372-86. doi: 10.1111/j.1462-2920.2011.02514.x. Epub 2011 Jun 8.


Prochlorococcus: advantages and limits of minimalism.

Partensky F, Garczarek L.

Ann Rev Mar Sci. 2010;2:305-31. Review.


Ultraviolet stress delays chromosome replication in light/dark synchronized cells of the marine cyanobacterium Prochlorococcus marinus PCC9511.

Kolowrat C, Partensky F, Mella-Flores D, Le Corguillé G, Boutte C, Blot N, Ratin M, Ferréol M, Lecomte X, Gourvil P, Lennon JF, Kehoe DM, Garczarek L.

BMC Microbiol. 2010 Jul 29;10:204. doi: 10.1186/1471-2180-10-204.


Photosystem I gene cassettes are present in marine virus genomes.

Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI, Nelson N, Béjà O.

Nature. 2009 Sep 10;461(7261):258-62. doi: 10.1038/nature08284. Epub 2009 Aug 26.


Microbial community genomics in eastern Mediterranean Sea surface waters.

Feingersch R, Suzuki MT, Shmoish M, Sharon I, Sabehi G, Partensky F, Béjà O.

ISME J. 2010 Jan;4(1):78-87. doi: 10.1038/ismej.2009.92. Epub 2009 Aug 20.


Ecological genomics of marine picocyanobacteria.

Scanlan DJ, Ostrowski M, Mazard S, Dufresne A, Garczarek L, Hess WR, Post AF, Hagemann M, Paulsen I, Partensky F.

Microbiol Mol Biol Rev. 2009 Jun;73(2):249-99. doi: 10.1128/MMBR.00035-08. Review.


Phycourobilin in trichromatic phycocyanin from oceanic cyanobacteria is formed post-translationally by a phycoerythrobilin lyase-isomerase.

Blot N, Wu XJ, Thomas JC, Zhang J, Garczarek L, Böhm S, Tu JM, Zhou M, Plöscher M, Eichacker L, Partensky F, Scheer H, Zhao KH.

J Biol Chem. 2009 Apr 3;284(14):9290-8. doi: 10.1074/jbc.M809784200. Epub 2009 Jan 31.


DNA/RNA analysis of phytoplankton by flow cytometry.

Marie D, Simon N, Guillou L, Partensky F, Vaulot D.

Curr Protoc Cytom. 2001 May;Chapter 11:Unit 11.12. doi: 10.1002/0471142956.cy1112s11.


Enumeration of phytoplankton, bacteria, and viruses in marine samples.

Marie D, Partensky F, Vaulot D, Brussaard C.

Curr Protoc Cytom. 2001 May;Chapter 11:Unit 11.11. doi: 10.1002/0471142956.cy1111s10.


Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria.

Dufresne A, Ostrowski M, Scanlan DJ, Garczarek L, Mazard S, Palenik BP, Paulsen IT, de Marsac NT, Wincker P, Dossat C, Ferriera S, Johnson J, Post AF, Hess WR, Partensky F.

Genome Biol. 2008;9(5):R90. doi: 10.1186/gb-2008-9-5-r90. Epub 2008 May 28.


Genome streamlining results in loss of robustness of the circadian clock in the marine cyanobacterium Prochlorococcus marinus PCC 9511.

Holtzendorff J, Partensky F, Mella D, Lennon JF, Hess WR, Garczarek L.

J Biol Rhythms. 2008 Jun;23(3):187-99. doi: 10.1177/0748730408316040.

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