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Results: 1 to 20 of 162

1.

Combining progression-free survival and overall survival as a novel composite endpoint for glioblastoma trials.

Trippa L, Wen PY, Parmigiani G, Berry DA, Alexander BM.

Neuro Oncol. 2015 Jan 7. pii: nou345. [Epub ahead of print]

PMID:
25568226
[PubMed - as supplied by publisher]
2.

Only three driver gene mutations are required for the development of lung and colorectal cancers.

Tomasetti C, Marchionni L, Nowak MA, Parmigiani G, Vogelstein B.

Proc Natl Acad Sci U S A. 2015 Jan 6;112(1):118-23. doi: 10.1073/pnas.1421839112. Epub 2014 Dec 22.

PMID:
25535351
[PubMed - in process]
3.

Differential and limited expression of mutant alleles in multiple myeloma.

Rashid NU, Sperling AS, Bolli N, Wedge DC, Van Loo P, Tai YT, Shammas MA, Fulciniti M, Samur MK, Richardson PG, Magrangeas F, Minvielle S, Futreal PA, Anderson KC, Avet-Loiseau H, Campbell PJ, Parmigiani G, Munshi NC.

Blood. 2014 Nov 13;124(20):3110-7. doi: 10.1182/blood-2014-04-569327. Epub 2014 Sep 18.

PMID:
25237203
[PubMed - indexed for MEDLINE]
4.

Misreported family histories and underestimation of risk.

Braun D, Gorfine M, Parmigiani G.

J Clin Oncol. 2014 Nov 10;32(32):3682-3. doi: 10.1200/JCO.2014.57.4848. Epub 2014 Sep 8. No abstract available.

PMID:
25199751
[PubMed - in process]
5.

Cost-effectiveness of alternative strategies for integrating MRI into breast cancer screening for women at high risk.

Ahern CH, Shih YC, Dong W, Parmigiani G, Shen Y.

Br J Cancer. 2014 Oct 14;111(8):1542-51. doi: 10.1038/bjc.2014.458. Epub 2014 Aug 19.

PMID:
25137022
[PubMed - indexed for MEDLINE]
6.

Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis.

Zhao SD, Parmigiani G, Huttenhower C, Waldron L.

Bioinformatics. 2014 Nov 1;30(21):3062-9. doi: 10.1093/bioinformatics/btu488. Epub 2014 Jul 23.

PMID:
25061068
[PubMed - indexed for MEDLINE]
7.

Cross-study validation for the assessment of prediction algorithms.

Bernau C, Riester M, Boulesteix AL, Parmigiani G, Huttenhower C, Waldron L, Trippa L.

Bioinformatics. 2014 Jun 15;30(12):i105-12. doi: 10.1093/bioinformatics/btu279.

PMID:
24931973
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Recent BRCAPRO upgrades significantly improve calibration.

Mazzola E, Chipman J, Cheng SC, Parmigiani G.

Cancer Epidemiol Biomarkers Prev. 2014 Aug;23(8):1689-95. doi: 10.1158/1055-9965.EPI-13-1364. Epub 2014 Jun 2.

PMID:
24891549
[PubMed - in process]
9.

Completing the results of the 2013 Boston marathon.

Hammerling D, Cefalu M, Cisewski J, Dominici F, Parmigiani G, Paulson C, Smith RL.

PLoS One. 2014 Apr 11;9(4):e93800. doi: 10.1371/journal.pone.0093800. eCollection 2014.

PMID:
24727904
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Risk prediction for late-stage ovarian cancer by meta-analysis of 1525 patient samples.

Riester M, Wei W, Waldron L, Culhane AC, Trippa L, Oliva E, Kim SH, Michor F, Huttenhower C, Parmigiani G, Birrer MJ.

J Natl Cancer Inst. 2014 Apr 3;106(5). pii: dju048. doi: 10.1093/jnci/dju048.

PMID:
24700803
[PubMed - indexed for MEDLINE]
11.

Comparative meta-analysis of prognostic gene signatures for late-stage ovarian cancer.

Waldron L, Haibe-Kains B, Culhane AC, Riester M, Ding J, Wang XV, Ahmadifar M, Tyekucheva S, Bernau C, Risch T, Ganzfried BF, Huttenhower C, Birrer M, Parmigiani G.

J Natl Cancer Inst. 2014 Apr 3;106(5). pii: dju049. doi: 10.1093/jnci/dju049. Review.

PMID:
24700801
[PubMed - indexed for MEDLINE]
12.

Frailty Models for Familial Risk with Application to Breast Cancer.

Gorfine M, Hsu L, Parmigiani G.

J Am Stat Assoc. 2013 Dec 1;108(504):1205-1215.

PMID:
24678132
[PubMed]
Free PMC Article
13.

Modular network construction using eQTL data: an analysis of computational costs and benefits.

Ho YY, Cope LM, Parmigiani G.

Front Genet. 2014 Feb 26;5:40. doi: 10.3389/fgene.2014.00040. eCollection 2014.

PMID:
24616734
[PubMed]
Free PMC Article
14.

Why tyrosine kinase inhibitor resistance is common in advanced gastrointestinal stromal tumors.

Tomasetti C, Demetri GD, Parmigiani G.

F1000Res. 2013 Jul 9;2:152. doi: 10.12688/f1000research.2-152.v1. eCollection 2013.

PMID:
24555070
[PubMed]
Free PMC Article
15.

Mental capacity in patients involuntarily or voluntarily receiving psychiatric treatment for an acute mental disorder.

Mandarelli G, Tarsitani L, Parmigiani G, Polselli GM, Frati P, Biondi M, Ferracuti S.

J Forensic Sci. 2014 Jul;59(4):1002-7. doi: 10.1111/1556-4029.12420. Epub 2014 Feb 6.

PMID:
24502678
[PubMed - in process]
16.

Heterogeneity of genomic evolution and mutational profiles in multiple myeloma.

Bolli N, Avet-Loiseau H, Wedge DC, Van Loo P, Alexandrov LB, Martincorena I, Dawson KJ, Iorio F, Nik-Zainal S, Bignell GR, Hinton JW, Li Y, Tubio JM, McLaren S, O' Meara S, Butler AP, Teague JW, Mudie L, Anderson E, Rashid N, Tai YT, Shammas MA, Sperling AS, Fulciniti M, Richardson PG, Parmigiani G, Magrangeas F, Minvielle S, Moreau P, Attal M, Facon T, Futreal PA, Anderson KC, Campbell PJ, Munshi NC.

Nat Commun. 2014;5:2997. doi: 10.1038/ncomms3997.

PMID:
24429703
[PubMed - in process]
Free PMC Article
17.

Reclassification of predictions for uncovering subgroup specific improvement.

Biswas S, Arun B, Parmigiani G.

Stat Med. 2014 May 20;33(11):1914-27. doi: 10.1002/sim.6077. Epub 2013 Dec 18.

PMID:
24353130
[PubMed - indexed for MEDLINE]
18.

Statistical tools and R software for cancer driver probabilities.

Parmigiani G, Boca S, Ding J, Trippa L.

Methods Mol Biol. 2014;1101:113-34. doi: 10.1007/978-1-62703-721-1_7.

PMID:
24233780
[PubMed - indexed for MEDLINE]
19.

A decision-theory approach to interpretable set analysis for high-dimensional data.

Boca SM, Bravo HC, Caffo B, Leek JT, Parmigiani G.

Biometrics. 2013 Sep;69(3):614-23. doi: 10.1111/biom.12060. Epub 2013 Aug 2.

PMID:
23909925
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Whole-genome sequencing identifies a recurrent functional synonymous mutation in melanoma.

Gartner JJ, Parker SC, Prickett TD, Dutton-Regester K, Stitzel ML, Lin JC, Davis S, Simhadri VL, Jha S, Katagiri N, Gotea V, Teer JK, Wei X, Morken MA, Bhanot UK; NISC Comparative Sequencing Program, Chen G, Elnitski LL, Davies MA, Gershenwald JE, Carter H, Karchin R, Robinson W, Robinson S, Rosenberg SA, Collins FS, Parmigiani G, Komar AA, Kimchi-Sarfaty C, Hayward NK, Margulies EH, Samuels Y.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13481-6. doi: 10.1073/pnas.1304227110. Epub 2013 Jul 30. Erratum in: Proc Natl Acad Sci U S A. 2014 Jan 7;111(1):563.

PMID:
23901115
[PubMed - indexed for MEDLINE]
Free PMC Article

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