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Results: 1 to 20 of 45

1.

First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking.

Sekiguchi Y, Ohashi A, Parks DH, Yamauchi T, Tyson GW, Hugenholtz P.

PeerJ. 2015 Jan 27;3:e740. doi: 10.7717/peerj.740. eCollection 2015.

PMID:
25650158
[PubMed]
Free PMC Article
2.

STAMP: statistical analysis of taxonomic and functional profiles.

Parks DH, Tyson GW, Hugenholtz P, Beiko RG.

Bioinformatics. 2014 Nov 1;30(21):3123-4. doi: 10.1093/bioinformatics/btu494. Epub 2014 Jul 23.

PMID:
25061070
[PubMed - indexed for MEDLINE]
3.

An expanded genomic representation of the phylum cyanobacteria.

Soo RM, Skennerton CT, Sekiguchi Y, Imelfort M, Paech SJ, Dennis PG, Steen JA, Parks DH, Tyson GW, Hugenholtz P.

Genome Biol Evol. 2014 May;6(5):1031-45. doi: 10.1093/gbe/evu073.

PMID:
24709563
[PubMed - in process]
Free PMC Article
4.

GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework.

Parks DH, Mankowski T, Zangooei S, Porter MS, Armanini DG, Baird DJ, Langille MG, Beiko RG.

PLoS One. 2013 Jul 29;8(7):e69885. doi: 10.1371/journal.pone.0069885. Print 2013.

PMID:
23922841
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Measuring community similarity with phylogenetic networks.

Parks DH, Beiko RG.

Mol Biol Evol. 2012 Dec;29(12):3947-58. doi: 10.1093/molbev/mss200. Epub 2012 Aug 21.

PMID:
22915830
[PubMed - indexed for MEDLINE]
Free Article
6.

Measures of phylogenetic differentiation provide robust and complementary insights into microbial communities.

Parks DH, Beiko RG.

ISME J. 2013 Jan;7(1):173-83. doi: 10.1038/ismej.2012.88. Epub 2012 Aug 2.

PMID:
22855211
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Rapid identification of high-confidence taxonomic assignments for metagenomic data.

MacDonald NJ, Parks DH, Beiko RG.

Nucleic Acids Res. 2012 Aug;40(14):e111. doi: 10.1093/nar/gks335. Epub 2012 Apr 24.

PMID:
22532608
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Classifying short genomic fragments from novel lineages using composition and homology.

Parks DH, MacDonald NJ, Beiko RG.

BMC Bioinformatics. 2011 Aug 9;12:328. doi: 10.1186/1471-2105-12-328.

PMID:
21827705
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Toll-like receptor 3 upregulation by type I interferon in healthy and scleroderma dermal fibroblasts.

Agarwal SK, Wu M, Livingston CK, Parks DH, Mayes MD, Arnett FC, Tan FK.

Arthritis Res Ther. 2011 Jan 11;13(1):R3. doi: 10.1186/ar3221.

PMID:
21223583
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Identifying biologically relevant differences between metagenomic communities.

Parks DH, Beiko RG.

Bioinformatics. 2010 Mar 15;26(6):715-21. doi: 10.1093/bioinformatics/btq041. Epub 2010 Feb 3.

PMID:
20130030
[PubMed - indexed for MEDLINE]
Free Article
11.

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF.

Appl Environ Microbiol. 2009 Dec;75(23):7537-41. doi: 10.1128/AEM.01541-09. Epub 2009 Oct 2.

PMID:
19801464
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

GenGIS: A geospatial information system for genomic data.

Parks DH, Porter M, Churcher S, Wang S, Blouin C, Whalley J, Brooks S, Beiko RG.

Genome Res. 2009 Oct;19(10):1896-904. doi: 10.1101/gr.095612.109. Epub 2009 Jul 27.

PMID:
19635847
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Saline irrigation to facilitate unfolding of selected full-thickness skin grafts.

Chen TM, Wanitphakdeedecha R, Nguyen TH, Parks DH.

Int J Dermatol. 2008 Aug;47(8):869-70. doi: 10.1111/j.1365-4632.2008.03592.x. No abstract available.

PMID:
18717877
[PubMed - indexed for MEDLINE]
14.

Pharmacokinetic evaluation of single-dose intravenous daptomycin in patients with thermal burn injury.

Mohr JF 3rd, Ostrosky-Zeichner L, Wainright DJ, Parks DH, Hollenbeck TC, Ericsson CD.

Antimicrob Agents Chemother. 2008 May;52(5):1891-3. doi: 10.1128/AAC.01321-07. Epub 2008 Feb 25.

PMID:
18299410
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Whole-molecule approach for determining orientation at isotropic surfaces by nonlinear vibrational spectroscopy.

Hore DK, Beaman DK, Parks DH, Richmond GL.

J Phys Chem B. 2005 Sep 8;109(35):16846-51.

PMID:
16853143
[PubMed - indexed for MEDLINE]
16.

Gestational gigantomastia after reduction mammaplasty.

Vidaeff AC, Parks DH.

Plast Reconstr Surg. 2004 Mar;113(3):1086-7. Review. No abstract available.

PMID:
15108923
[PubMed - indexed for MEDLINE]
17.

Gigantomastia complicating mirror syndrome in pregnancy.

Vidaeff AC, Ross PJ, Livingston CK, Parks DH.

Obstet Gynecol. 2003 May;101(5 Pt 2):1139-42.

PMID:
12738130
[PubMed - indexed for MEDLINE]
18.

Prognostic indicators in the elderly patient with burns.

Covington DS, Wainwright DJ, Parks DH.

J Burn Care Rehabil. 1996 May-Jun;17(3):222-30.

PMID:
8736367
[PubMed - indexed for MEDLINE]
19.

Changing patterns in the epidemiology and treatment of zygoma fractures: 10-year review.

Covington DS, Wainwright DJ, Teichgraeber JF, Parks DH.

J Trauma. 1994 Aug;37(2):243-8.

PMID:
8064924
[PubMed - indexed for MEDLINE]
20.

Academic consequences of a trauma system failure.

Fischer RP, Pepe PE, Reed RL 2nd, Parks DH, Prentice FD, Mattox KL.

J Trauma. 1990 Jul;30(7):784-90; discussion 790-1.

PMID:
2380995
[PubMed - indexed for MEDLINE]
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