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Items: 18


Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores.

Vilhjálmsson BJ, Yang J, Finucane HK, Gusev A, Lindström S, Ripke S, Genovese G, Loh PR, Bhatia G, Do R, Hayeck T, Won HH; Schizophrenia Working Group of the Psychiatric Genomics Consortium; Discovery, Biology, and Risk of Inherited Variants in Breast Cancer (DRIVE) study, Kathiresan S, Pato M, Pato C, Tamimi R, Stahl E, Zaitlen N, Pasaniuc B, Belbin G, Kenny EE, Schierup MH, De Jager P, Patsopoulos NA, McCarroll S, Daly M, Purcell S, Chasman D, Neale B, Goddard M, Visscher PM, Kraft P, Patterson N, Price AL; Discovery Biology and Risk of Inherited Variants in Breast Cancer DRIVE study.

Am J Hum Genet. 2015 Oct 1;97(4):576-92. doi: 10.1016/j.ajhg.2015.09.001.


[Facial pain].

Makhinov KA, Barinov AN, Zhestikova MG, Mingazova LR, Parkhomenko EV.

Zh Nevrol Psikhiatr Im S S Korsakova. 2015;115(7):79-88. Russian.


LD Score regression distinguishes confounding from polygenicity in genome-wide association studies.

Bulik-Sullivan BK, Loh PR, Finucane HK, Ripke S, Yang J; Schizophrenia Working Group of the Psychiatric Genomics Consortium, Patterson N, Daly MJ, Price AL, Neale BM.

Nat Genet. 2015 Mar;47(3):291-5. doi: 10.1038/ng.3211. Epub 2015 Feb 2.


Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases.

Gusev A, Lee SH, Trynka G, Finucane H, Vilhjálmsson BJ, Xu H, Zang C, Ripke S, Bulik-Sullivan B, Stahl E; Schizophrenia Working Group of the Psychiatric Genomics Consortium; SWE-SCZ Consortium, Kähler AK, Hultman CM, Purcell SM, McCarroll SA, Daly M, Pasaniuc B, Sullivan PF, Neale BM, Wray NR, Raychaudhuri S, Price AL; Schizophrenia Working Group of the Psychiatric Genomics Consortium; SWE-SCZ Consortium.

Am J Hum Genet. 2014 Nov 6;95(5):535-52. doi: 10.1016/j.ajhg.2014.10.004. Epub 2014 Nov 6.


Biological insights from 108 schizophrenia-associated genetic loci.

Schizophrenia Working Group of the Psychiatric Genomics Consortium.

Nature. 2014 Jul 24;511(7510):421-7. doi: 10.1038/nature13595. Epub 2014 Jul 22.


[Aging and pain: specific features of neuropathy treatment in the elderly].

Barinov AN, Parkhomenko EV, Makhinov KA.

Ter Arkh. 2014;86(12):135-41. Review. Russian.


Prospective investigation of autism and genotype-phenotype correlations in 22q13 deletion syndrome and SHANK3 deficiency.

Soorya L, Kolevzon A, Zweifach J, Lim T, Dobry Y, Schwartz L, Frank Y, Wang AT, Cai G, Parkhomenko E, Halpern D, Grodberg D, Angarita B, Willner JP, Yang A, Canitano R, Chaplin W, Betancur C, Buxbaum JD.

Mol Autism. 2013 Jun 11;4(1):18. doi: 10.1186/2040-2392-4-18.


The variant call format and VCFtools.

Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, Handsaker RE, Lunter G, Marth GT, Sherry ST, McVean G, Durbin R; 1000 Genomes Project Analysis Group.

Bioinformatics. 2011 Aug 1;27(15):2156-8. doi: 10.1093/bioinformatics/btr330. Epub 2011 Jun 7.


Gene-ontology enrichment analysis in two independent family-based samples highlights biologically plausible processes for autism spectrum disorders.

Anney RJ, Kenny EM, O'Dushlaine C, Yaspan BL, Parkhomenka E, Buxbaum JD, Sutcliffe J, Gill M, Gallagher L; Autism Genome Project, Buxbaum JD, Sutcliffe J, Gill M, Gallagher L.

Eur J Hum Genet. 2011 Oct;19(10):1082-9. doi: 10.1038/ejhg.2011.75. Epub 2011 Apr 27.


Using a higher criticism statistic to detect modest effects in a genome-wide study of rheumatoid arthritis.

Parkhomenko E, Tritchler D, Lemire M, Hu P, Beyene J.

BMC Proc. 2009 Dec 15;3 Suppl 7:S40.


Pathway-based analysis of a genome-wide case-control association study of rheumatoid arthritis.

Beyene J, Hu P, Hamid JS, Parkhomenko E, Paterson AD, Tritchler D.

BMC Proc. 2009 Dec 15;3 Suppl 7:S128.


Penetrance of HNPCC-related cancers in a retrolective cohort of 12 large Newfoundland families carrying a MSH2 founder mutation: an evaluation using modified segregation models.

Kopciuk KA, Choi YH, Parkhomenko E, Parfrey P, McLaughlin J, Green J, Briollais L.

Hered Cancer Clin Pract. 2009 Oct 28;7(1):16. doi: 10.1186/1897-4287-7-16.


Filtering genes for cluster and network analysis.

Tritchler D, Parkhomenko E, Beyene J.

BMC Bioinformatics. 2009 Jun 23;10:193. doi: 10.1186/1471-2105-10-193.


Sparse canonical correlation analysis with application to genomic data integration.

Parkhomenko E, Tritchler D, Beyene J.

Stat Appl Genet Mol Biol. 2009;8:Article 1. doi: 10.2202/1544-6115.1406. Epub 2009 Jan 6.


Impact of normalization and filtering on linkage analysis of gene expression data.

Beyene J, Hu P, Parkhomenko E, Tritchler D.

BMC Proc. 2007;1 Suppl 1:S150. Epub 2007 Dec 18.


Genome-wide sparse canonical correlation of gene expression with genotypes.

Parkhomenko E, Tritchler D, Beyene J.

BMC Proc. 2007;1 Suppl 1:S119. Epub 2007 Dec 18.


Multivariate analysis of complex gene expression and clinical phenotypes with genetic marker data.

Beyene J, Tritchler D, Bull SB, Cartier KC, Jonasdottir G, Kraja AT, Li N, Nock NL, Parkhomenko E, Rao JS, Stein CM, Sutradhar R, Waaijenborg S, Wang KS, Wang Y, Wolkow P.

Genet Epidemiol. 2007;31 Suppl 1:S103-9. Review.


In vitro effect of short peptides on expression of interleukin-2 gene in splenocytes.

Kazakova TB, Barabanova SV, Khavinson VKh, Glushikhina MS, Parkhomenko EP, Malinin VV, Korneva EA.

Bull Exp Biol Med. 2002 Jun;133(6):614-6.

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