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Items: 1 to 20 of 435

1.

Systematic surveillance detects multiple silent introductions and household transmission of methicillin-resistant Staphylococcus aureus USA300 in the east of England.

Toleman MS, Reuter S, Coll F, Harrison EM, Blane B, Brown NM, Török ME, Parkhill J, Peacock SJ.

J Infect Dis. 2016 Apr 27. pii: jiw166. [Epub ahead of print]

PMID:
27122590
2.

Black-Box, Real-Time Simulations of Transient Absorption Spectroscopy.

Nguyen TS, Koh JH, Lefelhocz S, Parkhill J.

J Phys Chem Lett. 2016 Apr 21;7(8):1590-5. doi: 10.1021/acs.jpclett.6b00421. Epub 2016 Apr 14.

PMID:
27064028
3.

DfrA-thyA double deletion in para-aminosalicylic acid resistant Mycobacterium tuberculosis Beijing strains.

Moradigaravand D, Grandjean L, Martinez E, Li H, Zheng J, Coronel J, Moore D, Török ME, Sintchenko V, Huang H, Javid B, Parkhill J, Peacock SJ, Köser CU.

Antimicrob Agents Chemother. 2016 Mar 28. pii: AAC.00253-16. [Epub ahead of print]

4.

Microevolution of Monophasic Salmonella Typhimurium during Epidemic, United Kingdom, 2005-2010.

Petrovska L, Mather AE, AbuOun M, Branchu P, Harris SR, Connor T, Hopkins KL, Underwood A, Lettini AA, Page A, Bagnall M, Wain J, Parkhill J, Dougan G, Davies R, Kingsley RA.

Emerg Infect Dis. 2016 Apr;22(4):617-24. doi: 10.3201/eid2204.150531.

5.

The Ess/Type VII secretion system of Staphylococcus aureus shows unexpected genetic diversity.

Warne B, Harkins CP, Harris SR, Vatsiou A, Stanley-Wall N, Parkhill J, Peacock SJ, Palmer T, Holden MT.

BMC Genomics. 2016 Mar 11;17(1):222. doi: 10.1186/s12864-016-2426-7.

6.

Genomic Analysis of Companion Rabbit Staphylococcus aureus.

Holmes MA, Harrison EM, Fisher EA, Graham EM, Parkhill J, Foster G, Paterson GK.

PLoS One. 2016 Mar 10;11(3):e0151458. doi: 10.1371/journal.pone.0151458. eCollection 2016.

7.

Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines.

Torondel B, Ensink JH, Gundogdu O, Ijaz UZ, Parkhill J, Abdelahi F, Nguyen VA, Sudgen S, Gibson W, Walker AW, Quince C.

Microb Biotechnol. 2016 Mar;9(2):209-23. doi: 10.1111/1751-7915.12334. Epub 2016 Feb 15.

8.

Chemokine (C-C Motif) Receptor 2 Mediates Dendritic Cell Recruitment to the Human Colon but Is Not Responsible for Differences Observed in Dendritic Cell Subsets, Phenotype, and Function Between the Proximal and Distal Colon.

Bernardo D, Durant L, Mann ER, Bassity E, Montalvillo E, Man R, Vora R, Reddi D, Bayiroglu F, Fernández-Salazar L, English NR, Peake ST, Landy J, Lee GH, Malietzis G, Siaw YH, Murugananthan AU, Hendy P, Sánchez-Recio E, Phillips RK, Garrote JA, Scott P, Parkhill J, Paulsen M, Hart AL, Al-Hassi HO, Arranz E, Walker AW, Carding SR, Knight SC.

Cell Mol Gastroenterol Hepatol. 2015 Sep 3;2(1):22-39.e5. eCollection 2016 Jan.

9.

Genomes on ice.

Parkhill J.

Nat Rev Microbiol. 2016 Mar;14(3):134. doi: 10.1038/nrmicro.2016.13. Epub 2016 Feb 8.

PMID:
26853114
10.

Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis.

Bryant JM, Thibault VC, Smith DG, McLuckie J, Heron I, Sevilla IA, Biet F, Harris SR, Maskell DJ, Bentley SD, Parkhill J, Stevenson K.

BMC Genomics. 2016 Jan 26;17(1):79. doi: 10.1186/s12864-015-2234-5.

11.

Kinetic Energy of Hydrocarbons as a Function of Electron Density and Convolutional Neural Networks.

Yao K, Parkhill J.

J Chem Theory Comput. 2016 Mar 8;12(3):1139-47. doi: 10.1021/acs.jctc.5b01011. Epub 2016 Feb 8.

PMID:
26812530
12.

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries.

Barquist L, Mayho M, Cummins C, Cain AK, Boinett C, Page AJ, Langridge GC, Quail MA, Keane JA, Parkhill J.

Bioinformatics. 2016 Jan 21. pii: btw022. [Epub ahead of print]

13.

Phase variation of a Type IIG restriction-modification enzyme alters site-specific methylation patterns and gene expression in Campylobacter jejuni strain NCTC11168.

Anjum A, Brathwaite KJ, Aidley J, Connerton PL, Cummings NJ, Parkhill J, Connerton I, Bayliss CD.

Nucleic Acids Res. 2016 Jan 18. pii: gkw019. [Epub ahead of print]

14.

Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network.

Brodrick HJ, Raven KE, Harrison EM, Blane B, Reuter S, Török ME, Parkhill J, Peacock SJ.

Genome Med. 2016 Jan 12;8(1):4. doi: 10.1186/s13073-015-0259-7.

15.

Modulation of the human gut microbiota by dietary fibres occurs at the species level.

Chung WS, Walker AW, Louis P, Parkhill J, Vermeiren J, Bosscher D, Duncan SH, Flint HJ.

BMC Biol. 2016 Jan 11;14:3. doi: 10.1186/s12915-015-0224-3.

16.

The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water.

Karkey A, Jombart T, Walker AW, Thompson CN, Torres A, Dongol S, Tran Vu Thieu N, Pham Thanh D, Tran Thi Ngoc D, Voong Vinh P, Singer AC, Parkhill J, Thwaites G, Basnyat B, Ferguson N, Baker S.

PLoS Negl Trop Dis. 2016 Jan 6;10(1):e0004346. doi: 10.1371/journal.pntd.0004346. eCollection 2016 Jan.

17.

Circlator: automated circularization of genome assemblies using long sequencing reads.

Hunt M, Silva ND, Otto TD, Parkhill J, Keane JA, Harris SR.

Genome Biol. 2015 Dec 29;16:294. doi: 10.1186/s13059-015-0849-0.

18.

Genomic perspectives on the evolution and spread of bacterial pathogens.

Bentley SD, Parkhill J.

Proc Biol Sci. 2015 Dec 22;282(1821):20150488. doi: 10.1098/rspb.2015.0488. Review.

19.

Genome-Based Infection Tracking Reveals Dynamics of Clostridium difficile Transmission and Disease Recurrence.

Kumar N, Miyajima F, He M, Roberts P, Swale A, Ellison L, Pickard D, Smith G, Molyneux R, Dougan G, Parkhill J, Wren BW, Parry CM, Pirmohamed M, Lawley TD.

Clin Infect Dis. 2016 Mar 15;62(6):746-52. doi: 10.1093/cid/civ1031. Epub 2015 Dec 18.

20.

Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland.

Reuter S, Török ME, Holden MT, Reynolds R, Raven KE, Blane B, Donker T, Bentley SD, Aanensen DM, Grundmann H, Feil EJ, Spratt BG, Parkhill J, Peacock SJ.

Genome Res. 2016 Feb;26(2):263-70. doi: 10.1101/gr.196709.115. Epub 2015 Dec 15.

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