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Results: 1 to 20 of 375

1.

Selective and genetic constraints on pneumococcal serotype switching.

Croucher NJ, Kagedan L, Thompson CM, Parkhill J, Bentley SD, Finkelstein JA, Lipsitch M, Hanage WP.

PLoS Genet. 2015 Mar 31;11(3):e1005095. doi: 10.1371/journal.pgen.1005095. eCollection 2015 Feb.

2.

Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis.

Weinert LA, Chaudhuri RR, Wang J, Peters SE, Corander J, Jombart T, Baig A, Howell KJ, Vehkala M, Välimäki N, Harris D, Chieu TT, Van Vinh Chau N, Campbell J, Schultsz C, Parkhill J, Bentley SD, Langford PR, Rycroft AN, Wren BW, Farrar J, Baker S, Hoa NT, Holden MT, Tucker AW, Maskell DJ; BRaDP1T Consortium.

Nat Commun. 2015 Mar 31;6:6740. doi: 10.1038/ncomms7740.

PMID:
25824154
3.

Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission.

Paterson GK, Harrison EM, Murray GG, Welch JJ, Warland JH, Holden MT, Morgan FJ, Ba X, Koop G, Harris SR, Maskell DJ, Peacock SJ, Herrtage ME, Parkhill J, Holmes MA.

Nat Commun. 2015 Mar 27;6:6560. doi: 10.1038/ncomms7560.

PMID:
25814293
4.

Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa.

Okoro CK, Barquist L, Connor TR, Harris SR, Clare S, Stevens MP, Arends MJ, Hale C, Kane L, Pickard DJ, Hill J, Harcourt K, Parkhill J, Dougan G, Kingsley RA.

PLoS Negl Trop Dis. 2015 Mar 24;9(3):e0003611. doi: 10.1371/journal.pntd.0003611. eCollection 2015 Mar.

5.

Emergent and evolving antimicrobial resistance cassettes in community-associated fusidic acid and meticillin-resistant Staphylococcus aureus.

Ellington MJ, Reuter S, Harris SR, Holden MT, Cartwright EJ, Greaves D, Gerver SM, Hope R, Brown NM, Török ME, Parkhill J, Köser CU, Peacock SJ.

Int J Antimicrob Agents. 2015 Feb 19. pii: S0924-8579(15)00064-3. doi: 10.1016/j.ijantimicag.2015.01.009. [Epub ahead of print]

PMID:
25769787
Free Article
6.

Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area.

Guerra-Assunção J, Crampin A, Houben R, Mzembe T, Mallard K, Coll F, Khan P, Banda L, Chiwaya A, Pereira R, McNerney R, Fine P, Parkhill J, Clark T, Glynn J.

Elife. 2015 Mar 3;4. doi: 10.7554/eLife.05166.

7.

Staphylococcus aureus adapts to oxidative stress by producing H2O2-resistant small colony variants via the SOS response.

Painter KL, Strange E, Parkhill J, Bamford KB, Armstrong-James D, Edwards AM.

Infect Immun. 2015 Feb 17. pii: IAI.03016-14. [Epub ahead of print]

PMID:
25690100
8.

Microbiota that affect risk for shigellosis in children in low-income countries.

Lindsay B, Oundo J, Hossain MA, Antonio M, Tamboura B, Walker AW, Paulson JN, Parkhill J, Omore R, Faruque AS, Das SK, Ikumapayi UN, Adeyemi M, Sanogo D, Saha D, Sow S, Farag TH, Nasrin D, Li S, Panchalingam S, Levine MM, Kotloff K, Magder LS, Hungerford L, Sommerfelt H, Pop M, Nataro JP, Stine OC.

Emerg Infect Dis. 2015 Feb;21(2):242-50. doi: 10.3201/eid2101.140795.

9.

TLR signaling modulates side effects of anticancer therapy in the small intestine.

Frank M, Hennenberg EM, Eyking A, Rünzi M, Gerken G, Scott P, Parkhill J, Walker AW, Cario E.

J Immunol. 2015 Feb 15;194(4):1983-95. doi: 10.4049/jimmunol.1402481. Epub 2015 Jan 14.

PMID:
25589072
10.

The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis.

Howell KJ, Weinert LA, Chaudhuri RR, Luan SL, Peters SE, Corander J, Harris D, Angen Ø, Aragon V, Bensaid A, Williamson SM, Parkhill J, Langford PR, Rycroft AN, Wren BW, Holden MT, Tucker AW, Maskell DJ.

BMC Genomics. 2014 Dec 24;15(1):1179. [Epub ahead of print]

11.

Patterns of genome evolution that have accompanied host adaptation in Salmonella.

Langridge GC, Fookes M, Connor TR, Feltwell T, Feasey N, Parsons BN, Seth-Smith HM, Barquist L, Stedman A, Humphrey T, Wigley P, Peters SE, Maskell DJ, Corander J, Chabalgoity JA, Barrow P, Parkhill J, Dougan G, Thomson NR.

Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):863-8. doi: 10.1073/pnas.1416707112. Epub 2014 Dec 22.

12.

A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes.

Bratcher HB, Corton C, Jolley KA, Parkhill J, Maiden MC.

BMC Genomics. 2014 Dec 18;15:1138. doi: 10.1186/1471-2164-15-1138.

13.

Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting.

Tong SY, Holden MT, Nickerson EK, Cooper BS, Köser CU, Cori A, Jombart T, Cauchemez S, Fraser C, Wuthiekanun V, Thaipadungpanit J, Hongsuwan M, Day NP, Limmathurotsakul D, Parkhill J, Peacock SJ.

Genome Res. 2015 Jan;25(1):111-8. doi: 10.1101/gr.174730.114. Epub 2014 Dec 9.

14.

Genomic Analysis of Isolates From the United Kingdom 2012 Pertussis Outbreak Reveals That Vaccine Antigen Genes Are Unusually Fast Evolving.

Sealey KL, Harris SR, Fry NK, Hurst LD, Gorringe AR, Parkhill J, Preston A.

J Infect Dis. 2014 Dec 8. pii: jiu665. [Epub ahead of print]

PMID:
25489002
15.

Global phylogenomic analysis of nonencapsulated Streptococcus pneumoniae reveals a deep-branching classic lineage that is distinct from multiple sporadic lineages.

Hilty M, Wüthrich D, Salter SJ, Engel H, Campbell S, Sá-Leão R, de Lencastre H, Hermans P, Sadowy E, Turner P, Chewapreecha C, Diggle M, Pluschke G, McGee L, Köseoğlu Eser Ö, Low DE, Smith-Vaughan H, Endimiani A, Küffer M, Dupasquier M, Beaudoing E, Weber J, Bruggmann R, Hanage WP, Parkhill J, Hathaway LJ, Mühlemann K, Bentley SD.

Genome Biol Evol. 2014 Dec 4;6(12):3281-94. doi: 10.1093/gbe/evu263.

16.

Implications of multiple freeze-thawing on respiratory samples for culture-independent analyses.

Cuthbertson L, Rogers GB, Walker AW, Oliver A, Hoffman LR, Carroll MP, Parkhill J, Bruce KD, van der Gast CJ.

J Cyst Fibros. 2014 Oct 24. pii: S1569-1993(14)00231-8. doi: 10.1016/j.jcf.2014.10.004. [Epub ahead of print]

17.

Bacillary dysentery from World War 1 and NCTC1, the first bacterial isolate in the National Collection.

Mather AE, Baker KS, McGregor H, Coupland P, Mather PL, Deheer-Graham A, Parkhill J, Bracegirdle P, Russell JE, Thomson NR.

Lancet. 2014 Nov 8;384(9955):1720. doi: 10.1016/S0140-6736(14)61790-6. Epub 2014 Nov 7. No abstract available.

PMID:
25441203
18.

The extant World War 1 dysentery bacillus NCTC1: a genomic analysis.

Baker KS, Mather AE, McGregor H, Coupland P, Langridge GC, Day M, Deheer-Graham A, Parkhill J, Russell JE, Thomson NR.

Lancet. 2014 Nov 8;384(9955):1691-7. doi: 10.1016/S0140-6736(14)61789-X. Epub 2014 Nov 7.

19.

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.

Croucher NJ, Page AJ, Connor TR, Delaney AJ, Keane JA, Bentley SD, Parkhill J, Harris SR.

Nucleic Acids Res. 2015 Feb 18;43(3):e15. doi: 10.1093/nar/gku1196. Epub 2014 Nov 20.

20.

Identification of antigen-specific B cell receptor sequences using public repertoire analysis.

Trück J, Ramasamy MN, Galson JD, Rance R, Parkhill J, Lunter G, Pollard AJ, Kelly DF.

J Immunol. 2015 Jan 1;194(1):252-61. doi: 10.4049/jimmunol.1401405. Epub 2014 Nov 12.

PMID:
25392534
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