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Results: 1 to 20 of 80

1.

A simple molecular mechanics integrator in mixed rigid body and dihedral angle space.

Vitalis A, Pappu RV.

J Chem Phys. 2014 Jul 21;141(3):034105. doi: 10.1063/1.4887339.

PMID:
25053299
[PubMed - in process]
2.

Endogenously Expressed IL-13Rα2 Attenuates IL-13-Mediated Responses but Does Not Activate Signaling in Human Lung Fibroblasts.

Chandriani S, DePianto DJ, N'Diaye EN, Abbas AR, Jackman J, Bevers J 3rd, Ramirez-Carrozzi V, Pappu R, Kauder SE, Toy K, Ha C, Modrusan Z, Wu LC, Collard HR, Wolters PJ, Egen JG, Arron JR.

J Immunol. 2014 Jul 1;193(1):111-9. doi: 10.4049/jimmunol.1301761. Epub 2014 May 30.

PMID:
24879793
[PubMed - in process]
3.

KAP-1 Promotes Resection of Broken DNA Ends Not Protected by γ-H2AX and 53BP1 in G1-Phase Lymphocytes.

Tubbs AT, Dorsett Y, Chan E, Helmink B, Lee BS, Hung P, George R, Bredemeyer AL, Mittal A, Pappu RV, Chowdhury D, Mosammaparast N, Krangel MS, Sleckman BP.

Mol Cell Biol. 2014 Aug 1;34(15):2811-21. doi: 10.1128/MCB.00441-14. Epub 2014 May 19.

PMID:
24842905
[PubMed - in process]
4.

Classification of intrinsically disordered regions and proteins.

van der Lee R, Buljan M, Lang B, Weatheritt RJ, Daughdrill GW, Dunker AK, Fuxreiter M, Gough J, Gsponer J, Jones DT, Kim PM, Kriwacki RW, Oldfield CJ, Pappu RV, Tompa P, Uversky VN, Wright PE, Babu MM.

Chem Rev. 2014 Jul 9;114(13):6589-631. doi: 10.1021/cr400525m. Epub 2014 Apr 29. No abstract available.

PMID:
24773235
[PubMed - in process]
5.

Unmasking the roles of N- and C-terminal flanking sequences from exon 1 of huntingtin as modulators of polyglutamine aggregation.

Crick SL, Ruff KM, Garai K, Frieden C, Pappu RV.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20075-80. doi: 10.1073/pnas.1320626110. Epub 2013 Nov 26.

PMID:
24282292
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Denatured state ensembles with the same radii of gyration can form significantly different long-range contacts.

Luan B, Lyle N, Pappu RV, Raleigh DP.

Biochemistry. 2014 Jan 14;53(1):39-47. doi: 10.1021/bi4008337. Epub 2013 Dec 20.

PMID:
24280003
[PubMed - indexed for MEDLINE]
7.

TNF superfamily member TL1A elicits type 2 innate lymphoid cells at mucosal barriers.

Yu X, Pappu R, Ramirez-Carrozzi V, Ota N, Caplazi P, Zhang J, Yan D, Xu M, Lee WP, Grogan JL.

Mucosal Immunol. 2014 May;7(3):730-40. doi: 10.1038/mi.2013.92. Epub 2013 Nov 13.

PMID:
24220298
[PubMed - in process]
Free PMC Article
8.

Early illness features associated with mortality in the juvenile idiopathic inflammatory myopathies.

Huber AM, Mamyrova G, Lachenbruch PA, Lee JA, Katz JD, Targoff IN, Miller FW, Rider LG; Childhood Myositis Heterogeneity Collaborative Study Group.

Arthritis Care Res (Hoboken). 2014 May;66(5):732-40. doi: 10.1002/acr.22212.

PMID:
24151254
[PubMed - indexed for MEDLINE]
9.

Specification of type 2 innate lymphocytes by the transcriptional determinant Gfi1.

Spooner CJ, Lesch J, Yan D, Khan AA, Abbas A, Ramirez-Carrozzi V, Zhou M, Soriano R, Eastham-Anderson J, Diehl L, Lee WP, Modrusan Z, Pappu R, Xu M, DeVoss J, Singh H.

Nat Immunol. 2013 Dec;14(12):1229-36. doi: 10.1038/ni.2743. Epub 2013 Oct 20.

PMID:
24141388
[PubMed - indexed for MEDLINE]
10.

A quantitative measure for protein conformational heterogeneity.

Lyle N, Das RK, Pappu RV.

J Chem Phys. 2013 Sep 28;139(12):121907. doi: 10.1063/1.4812791.

PMID:
24089719
[PubMed - indexed for MEDLINE]
11.

Clinical and laboratory features distinguishing juvenile polymyositis and muscular dystrophy.

Mamyrova G, Katz JD, Jones RV, Targoff IN, Lachenbruch PA, Jones OY, Miller FW, Rider LG; Childhood Myositis Heterogeneity Collaborative Study Group.

Arthritis Care Res (Hoboken). 2013 Dec;65(12):1969-75. doi: 10.1002/acr.22088.

PMID:
23925923
[PubMed - indexed for MEDLINE]
12.

Conformations of intrinsically disordered proteins are influenced by linear sequence distributions of oppositely charged residues.

Das RK, Pappu RV.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13392-7. doi: 10.1073/pnas.1304749110. Epub 2013 Jul 30.

PMID:
23901099
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The myositis autoantibody phenotypes of the juvenile idiopathic inflammatory myopathies.

Rider LG, Shah M, Mamyrova G, Huber AM, Rice MM, Targoff IN, Miller FW; Childhood Myositis Heterogeneity Collaborative Study Group.

Medicine (Baltimore). 2013 Jul;92(4):223-43. doi: 10.1097/MD.0b013e31829d08f9.

PMID:
23877355
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Brief report: ultraviolet radiation exposure is associated with clinical and autoantibody phenotypes in juvenile myositis.

Shah M, Targoff IN, Rice MM, Miller FW, Rider LG; Childhood Myositis Heterogeneity Collaborative Study Group.

Arthritis Rheum. 2013 Jul;65(7):1934-41. doi: 10.1002/art.37985.

PMID:
23658122
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Safety of abatacept administered intravenously in treatment of rheumatoid arthritis: integrated analyses of up to 8 years of treatment from the abatacept clinical trial program.

Weinblatt ME, Moreland LW, Westhovens R, Cohen RB, Kelly SM, Khan N, Pappu R, Delaet I, Luo A, Gujrathi S, Hochberg MC.

J Rheumatol. 2013 Jun;40(6):787-97. doi: 10.3899/jrheum.120906. Epub 2013 Apr 15.

PMID:
23588946
[PubMed - indexed for MEDLINE]
Free Article
16.

The denatured state ensemble contains significant local and long-range structure under native conditions: analysis of the N-terminal domain of ribosomal protein L9.

Meng W, Luan B, Lyle N, Pappu RV, Raleigh DP.

Biochemistry. 2013 Apr 16;52(15):2662-71. doi: 10.1021/bi301667u. Epub 2013 Apr 4.

PMID:
23480024
[PubMed - indexed for MEDLINE]
17.

Experiments and simulations show how long-range contacts can form in expanded unfolded proteins with negligible secondary structure.

Meng W, Lyle N, Luan B, Raleigh DP, Pappu RV.

Proc Natl Acad Sci U S A. 2013 Feb 5;110(6):2123-8. doi: 10.1073/pnas.1216979110. Epub 2013 Jan 22.

PMID:
23341588
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The clinical phenotypes of the juvenile idiopathic inflammatory myopathies.

Shah M, Mamyrova G, Targoff IN, Huber AM, Malley JD, Rice MM, Miller FW, Rider LG; Childhood Myositis Heterogeneity Collaborative Study Group.

Medicine (Baltimore). 2013 Jan;92(1):25-41. doi: 10.1097/MD.0b013e31827f264d.

PMID:
23263716
[PubMed - indexed for MEDLINE]
19.

Describing sequence-ensemble relationships for intrinsically disordered proteins.

Mao AH, Lyle N, Pappu RV.

Biochem J. 2013 Jan 15;449(2):307-18. doi: 10.1042/BJ20121346. Review.

PMID:
23240611
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

How is functional specificity achieved through disordered regions of proteins?

Das RK, Mittal A, Pappu RV.

Bioessays. 2013 Jan;35(1):17-22. doi: 10.1002/bies.201200115. Epub 2012 Nov 9.

PMID:
23138868
[PubMed - indexed for MEDLINE]

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