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Items: 1 to 20 of 23


Next Generation Statistical Genetics: Modeling, Penalization, and Optimization in High-Dimensional Data.

Lange K, Papp JC, Sinsheimer JS, Sobel EM.

Annu Rev Stat Appl. 2014 Jan 1;1(1):279-300.


Tobacco smoking, NBS1 polymorphisms, and survival in lung and upper aerodigestive tract cancers with semi-Bayes adjustment for hazard ratio variation.

Yang T, Chang PY, Park SL, Bastani D, Chang SC, Morgenstern H, Tashkin DP, Mao JT, Papp JC, Rao JY, Cozen W, Mack TM, Greenland S, Zhang ZF.

Cancer Causes Control. 2014 Jan;25(1):11-23. doi: 10.1007/s10552-013-0303-0. Epub 2013 Oct 29.


The systems genetics resource: a web application to mine global data for complex disease traits.

van Nas A, Pan C, Ingram-Drake LA, Ghazalpour A, Drake TA, Sobel EM, Papp JC, Lusis AJ.

Front Genet. 2013 May 20;4:84. doi: 10.3389/fgene.2013.00084. eCollection 2013.


Mendel: the Swiss army knife of genetic analysis programs.

Lange K, Papp JC, Sinsheimer JS, Sripracha R, Zhou H, Sobel EM.

Bioinformatics. 2013 Jun 15;29(12):1568-70. doi: 10.1093/bioinformatics/btt187. Epub 2013 Apr 22.


Pathway analysis software: annotation errors and solutions.

Henderson-Maclennan NK, Papp JC, Talbot CC Jr, McCabe ER, Presson AP.

Mol Genet Metab. 2010 Oct-Nov;101(2-3):134-40. doi: 10.1016/j.ymgme.2010.06.005. Epub 2010 Jun 22.


Associations between NBS1 polymorphisms, haplotypes and smoking-related cancers.

Park SL, Bastani D, Goldstein BY, Chang SC, Cozen W, Cai L, Cordon-Cardo C, Ding B, Greenland S, He N, Hussain SK, Jiang Q, Lee YC, Liu S, Lu ML, Mack TM, Mao JT, Morgenstern H, Mu LN, Oh SS, Pantuck A, Papp JC, Rao J, Reuter VE, Tashkin DP, Wang H, You NC, Yu SZ, Zhao JK, Zhang ZF.

Carcinogenesis. 2010 Jul;31(7):1264-71. doi: 10.1093/carcin/bgq096. Epub 2010 May 17.


A powerful score test to detect positive selection in genome-wide scans.

Zhong M, Lange K, Papp JC, Fan R.

Eur J Hum Genet. 2010 Oct;18(10):1148-59. doi: 10.1038/ejhg.2010.60. Epub 2010 May 12.


Physically constrained maximum likelihood mode filtering.

Papp JC, Preisig JC, Morozov AK.

J Acoust Soc Am. 2010 Apr;127(4):2385-91. doi: 10.1121/1.3327799.


Linkage of posterior amorphous corneal dystrophy to chromosome 12q21.33 and exclusion of coding region mutations in KERA, LUM, DCN, and EPYC.

Aldave AJ, Rosenwasser GO, Yellore VS, Papp JC, Sobel EM, Pham MN, Chen MC, Dandekar S, Sripracha R, Rayner SA, Sassani JW, Gorin MB.

Invest Ophthalmol Vis Sci. 2010 Aug;51(8):4006-12. doi: 10.1167/iovs.09-4067. Epub 2010 Mar 31.


Single nucleotide polymorphisms of 8 inflammation-related genes and their associations with smoking-related cancers.

Oh SS, Chang SC, Cai L, Cordon-Cardo C, Ding BG, Greenland S, He N, Jiang Q, Kheifets L, Le A, Lee YC, Liu S, Lu ML, Mao JT, Morgenstern H, Mu LN, Pantuck A, Papp JC, Park SL, Rao JY, Reuter VE, Tashkin DP, Wang H, You NC, Yu SZ, Zhao JK, Belldegrun A, Zhang ZF.

Int J Cancer. 2010 Nov 1;127(9):2169-82. doi: 10.1002/ijc.25214.


Genetic variation in immune regulation and DNA repair pathways and stomach cancer in China.

Hussain SK, Mu LN, Cai L, Chang SC, Park SL, Oh SS, Wang Y, Goldstein BY, Ding BG, Jiang Q, Rao J, You NC, Yu SZ, Papp JC, Zhao JK, Wang H, Zhang ZF.

Cancer Epidemiol Biomarkers Prev. 2009 Aug;18(8):2304-9. doi: 10.1158/1055-9965.EPI-09-0233.


The value of avian genomics to the conservation of wildlife.

Romanov MN, Tuttle EM, Houck ML, Modi WS, Chemnick LG, Korody ML, Mork EM, Otten CA, Renner T, Jones KC, Dandekar S, Papp JC, Da Y; NISC Comparative Sequencing Program, Green ED, Magrini V, Hickenbotham MT, Glasscock J, McGrath S, Mardis ER, Ryder OA.

BMC Genomics. 2009 Jul 14;10 Suppl 2:S10. doi: 10.1186/1471-2164-10-S2-S10.


A heterozygote-homozygote test of Hardy-Weinberg equilibrium.

Zhou JJ, Lange K, Papp JC, Sinsheimer JS.

Eur J Hum Genet. 2009 Nov;17(11):1495-500. doi: 10.1038/ejhg.2009.57. Epub 2009 Apr 15.


Associations between single nucleotide polymorphisms in double-stranded DNA repair pathway genes and familial breast cancer.

Sehl ME, Langer LR, Papp JC, Kwan L, Seldon JL, Arellano G, Reiss J, Reed EF, Dandekar S, Korin Y, Sinsheimer JS, Zhang ZF, Ganz PA.

Clin Cancer Res. 2009 Mar 15;15(6):2192-203. doi: 10.1158/1078-0432.CCR-08-1417. Epub 2009 Mar 10.


A novel mutation in NDUFS4 causes Leigh syndrome in an Ashkenazi Jewish family.

Anderson SL, Chung WK, Frezzo J, Papp JC, Ekstein J, DiMauro S, Rubin BY.

J Inherit Metab Dis. 2008 Dec;31 Suppl 2:S461-7. doi: 10.1007/s10545-008-1049-9. Epub 2008 Dec 26.


Integrated weighted gene co-expression network analysis with an application to chronic fatigue syndrome.

Presson AP, Sobel EM, Papp JC, Suarez CJ, Whistler T, Rajeevan MS, Vernon SD, Horvath S.

BMC Syst Biol. 2008 Nov 6;2:95. doi: 10.1186/1752-0509-2-95.


Merging microsatellite data: enhanced methodology and software to combine genotype data for linkage and association analysis.

Presson AP, Sobel EM, Pajukanta P, Plaisier C, Weeks DE, Aberg K, Papp JC.

BMC Bioinformatics. 2008 Jul 21;9:317. doi: 10.1186/1471-2105-9-317.


Autosomal dominant cornea plana is not associated with pathogenic mutations in DCN, DSPG3, FOXC1, KERA, LUM, or PITX2.

Aldave AJ, Sonmez B, Bourla N, Schultz G, Papp JC, Salem AK, Rayner SA, Yellore VS.

Ophthalmic Genet. 2007 Jun;28(2):57-67.


Replication and refinement of linkage of posterior polymorphous corneal dystrophy to the posterior polymorphous corneal dystrophy 1 locus on chromosome 20.

Yellore VS, Papp JC, Sobel E, Khan MA, Rayner SA, Farber DB, Aldave AJ.

Genet Med. 2007 Apr;9(4):228-34.


Merging microsatellite data.

Presson AP, Sobel E, Lange K, Papp JC.

J Comput Biol. 2006 Jul-Aug;13(6):1131-47.

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