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Items: 1 to 20 of 206

2.

Whole-genome sequence of an evolved Clostridium pasteurianum strain reveals Spo0A deficiency responsible for increased butanol production and superior growth.

Sandoval NR, Venkataramanan KP, Groth TS, Papoutsakis ET.

Biotechnol Biofuels. 2015 Dec 24;8:227. doi: 10.1186/s13068-015-0408-7. eCollection 2015.

3.

Building cellular pathways and programs enabled by the genetic diversity of allo-genomes and meta-genomes.

Zingaro KA, Papoutsakis ET.

Curr Opin Biotechnol. 2015 Dec;36:16-31. doi: 10.1016/j.copbio.2015.08.005. Epub 2015 Aug 28. Review.

PMID:
26318075
4.

Complex and extensive post-transcriptional regulation revealed by integrative proteomic and transcriptomic analysis of metabolite stress response in Clostridium acetobutylicum.

Venkataramanan KP, Min L, Hou S, Jones SW, Ralston MT, Lee KH, Papoutsakis ET.

Biotechnol Biofuels. 2015 Jun 10;8:81. doi: 10.1186/s13068-015-0260-9. eCollection 2015.

5.

Editorial overview: Energy biotechnology.

Papoutsakis ET, Pronk JT.

Curr Opin Biotechnol. 2015 Jun;33:viii-xi. doi: 10.1016/j.copbio.2015.04.001. Epub 2015 May 18. No abstract available.

PMID:
25998091
6.

Expression of heterologous sigma factors enables functional screening of metagenomic and heterologous genomic libraries.

Gaida SM, Sandoval NR, Nicolaou SA, Chen Y, Venkataramanan KP, Papoutsakis ET.

Nat Commun. 2015 May 6;6:7045. doi: 10.1038/ncomms8045.

7.

Synthetic methylotrophy: engineering the production of biofuels and chemicals based on the biology of aerobic methanol utilization.

Whitaker WB, Sandoval NR, Bennett RK, Fast AG, Papoutsakis ET.

Curr Opin Biotechnol. 2015 Jun;33:165-75. doi: 10.1016/j.copbio.2015.01.007. Epub 2015 Mar 19. Review.

PMID:
25796071
8.

The Clostridium sporulation programs: diversity and preservation of endospore differentiation.

Al-Hinai MA, Jones SW, Papoutsakis ET.

Microbiol Mol Biol Rev. 2015 Mar;79(1):19-37. doi: 10.1128/MMBR.00025-14. Review.

PMID:
25631287
9.

Capturing the response of Clostridium acetobutylicum to chemical stressors using a regulated genome-scale metabolic model.

Dash S, Mueller TJ, Venkataramanan KP, Papoutsakis ET, Maranas CD.

Biotechnol Biofuels. 2014 Oct 14;7(1):144. doi: 10.1186/s13068-014-0144-4. eCollection 2014.

10.

Overexpression of the Lactobacillus plantarum peptidoglycan biosynthesis murA2 gene increases the tolerance of Escherichia coli to alcohols and enhances ethanol production.

Yuan Y, Bi C, Nicolaou SA, Zingaro KA, Ralston M, Papoutsakis ET.

Appl Microbiol Biotechnol. 2014 Oct;98(19):8399-411. doi: 10.1007/s00253-014-6004-0. Epub 2014 Aug 31.

PMID:
25173692
11.

Shear enhances thrombopoiesis and formation of microparticles that induce megakaryocytic differentiation of stem cells.

Jiang J, Woulfe DS, Papoutsakis ET.

Blood. 2014 Sep 25;124(13):2094-103. doi: 10.1182/blood-2014-01-547927. Epub 2014 Jun 19.

12.

Exploring the heterologous genomic space for building, stepwise, complex, multicomponent tolerance to toxic chemicals.

Zingaro KA, Nicolaou SA, Yuan Y, Papoutsakis ET.

ACS Synth Biol. 2014 Jul 18;3(7):476-86. doi: 10.1021/sb400156v. Epub 2014 Feb 19.

PMID:
24933690
13.

Proteomic analyses of the phase transition from acidogenesis to solventogenesis using solventogenic and non-solventogenic Clostridium acetobutylicum strains.

Jang YS, Han MJ, Lee J, Im JA, Lee YH, Papoutsakis ET, Bennett G, Lee SY.

Appl Microbiol Biotechnol. 2014 Jun;98(11):5105-15. doi: 10.1007/s00253-014-5738-z. Epub 2014 Apr 18.

PMID:
24743985
14.

Platelets from mice lacking the aryl hydrocarbon receptor exhibit defective collagen-dependent signaling.

Lindsey S, Jiang J, Woulfe D, Papoutsakis ET.

J Thromb Haemost. 2014;12(3):383-94. doi: 10.1111/jth.12490.

15.

The Clostridium small RNome that responds to stress: the paradigm and importance of toxic metabolite stress in C. acetobutylicum.

Venkataramanan KP, Jones SW, McCormick KP, Kunjeti SG, Ralston MT, Meyers BC, Papoutsakis ET.

BMC Genomics. 2013 Dec 4;14:849. doi: 10.1186/1471-2164-14-849.

16.

Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.

Wang Q, Venkataramanan KP, Huang H, Papoutsakis ET, Wu CH.

BMC Syst Biol. 2013 Nov 6;7:120. doi: 10.1186/1752-0509-7-120.

17.

σK of Clostridium acetobutylicum is the first known sporulation-specific sigma factor with two developmentally separated roles, one early and one late in sporulation.

Al-Hinai MA, Jones SW, Papoutsakis ET.

J Bacteriol. 2014 Jan;196(2):287-99. doi: 10.1128/JB.01103-13. Epub 2013 Nov 1.

18.

Dissecting the assays to assess microbial tolerance to toxic chemicals in bioprocessing.

Zingaro KA, Nicolaou SA, Papoutsakis ET.

Trends Biotechnol. 2013 Nov;31(11):643-53. doi: 10.1016/j.tibtech.2013.08.005. Epub 2013 Oct 1. Review.

PMID:
24094862
19.

Overexpression of fetA (ybbL) and fetB (ybbM), Encoding an Iron Exporter, Enhances Resistance to Oxidative Stress in Escherichia coli.

Nicolaou SA, Fast AG, Nakamaru-Ogiso E, Papoutsakis ET.

Appl Environ Microbiol. 2013 Dec;79(23):7210-9. doi: 10.1128/AEM.02322-13. Epub 2013 Sep 13.

20.

Synthetic tolerance: three noncoding small RNAs, DsrA, ArcZ and RprA, acting supra-additively against acid stress.

Gaida SM, Al-Hinai MA, Indurthi DC, Nicolaou SA, Papoutsakis ET.

Nucleic Acids Res. 2013 Oct;41(18):8726-37. doi: 10.1093/nar/gkt651. Epub 2013 Jul 27.

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