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Results: 17

1.

SNP discovery with EST and NextGen sequencing in switchgrass (Panicum virgatum L.).

Ersoz ES, Wright MH, Pangilinan JL, Sheehan MJ, Tobias C, Casler MD, Buckler ES, Costich DE.

PLoS One. 2012;7(9):e44112. doi: 10.1371/journal.pone.0044112. Epub 2012 Sep 25.

PMID:
23049744
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.

Blanc G, Agarkova I, Grimwood J, Kuo A, Brueggeman A, Dunigan DD, Gurnon J, Ladunga I, Lindquist E, Lucas S, Pangilinan J, Pröschold T, Salamov A, Schmutz J, Weeks D, Yamada T, Lomsadze A, Borodovsky M, Claverie JM, Grigoriev IV, Van Etten JL.

Genome Biol. 2012 May 25;13(5):R39. doi: 10.1186/gb-2012-13-5-r39.

PMID:
22630137
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes.

Dilly GF, Young CR, Lane WS, Pangilinan J, Girguis PR.

Proc Biol Sci. 2012 Aug 22;279(1741):3347-56. doi: 10.1098/rspb.2012.0098. Epub 2012 May 2.

PMID:
22553092
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Comparative genomics of xylose-fermenting fungi for enhanced biofuel production.

Wohlbach DJ, Kuo A, Sato TK, Potts KM, Salamov AA, Labutti KM, Sun H, Clum A, Pangilinan JL, Lindquist EA, Lucas S, Lapidus A, Jin M, Gunawan C, Balan V, Dale BE, Jeffries TW, Zinkel R, Barry KW, Grigoriev IV, Gasch AP.

Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):13212-7. doi: 10.1073/pnas.1103039108. Epub 2011 Jul 25.

PMID:
21788494
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.

Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort PJ, Culley D, Thykaer J, Frisvad JC, Nielsen KF, Albang R, Albermann K, Berka RM, Braus GH, Braus-Stromeyer SA, Corrochano LM, Dai Z, van Dijck PW, Hofmann G, Lasure LL, Magnuson JK, Menke H, Meijer M, Meijer SL, Nielsen JB, Nielsen ML, van Ooyen AJ, Pel HJ, Poulsen L, Samson RA, Stam H, Tsang A, van den Brink JM, Atkins A, Aerts A, Shapiro H, Pangilinan J, Salamov A, Lou Y, Lindquist E, Lucas S, Grimwood J, Grigoriev IV, Kubicek CP, Martinez D, van Peij NN, Roubos JA, Nielsen J, Baker SE.

Genome Res. 2011 Jun;21(6):885-97. doi: 10.1101/gr.112169.110. Epub 2011 May 4.

PMID:
21543515
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Obligate biotrophy features unraveled by the genomic analysis of rust fungi.

Duplessis S, Cuomo CA, Lin YC, Aerts A, Tisserant E, Veneault-Fourrey C, Joly DL, Hacquard S, Amselem J, Cantarel BL, Chiu R, Coutinho PM, Feau N, Field M, Frey P, Gelhaye E, Goldberg J, Grabherr MG, Kodira CD, Kohler A, Kües U, Lindquist EA, Lucas SM, Mago R, Mauceli E, Morin E, Murat C, Pangilinan JL, Park R, Pearson M, Quesneville H, Rouhier N, Sakthikumar S, Salamov AA, Schmutz J, Selles B, Shapiro H, Tanguay P, Tuskan GA, Henrissat B, Van de Peer Y, Rouzé P, Ellis JG, Dodds PN, Schein JE, Zhong S, Hamelin RC, Grigoriev IV, Szabo LJ, Martin F.

Proc Natl Acad Sci U S A. 2011 May 31;108(22):9166-71. doi: 10.1073/pnas.1019315108. Epub 2011 May 2.

PMID:
21536894
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Venous thromboembolism in patients with cancer: an overview for pharmacists using a case-based approach.

Pangilinan JM.

J Pharm Pract. 2010 Aug;23(4):294-302. doi: 10.1177/0897190010366929. Epub 2010 May 7. Review.

PMID:
21507829
[PubMed - indexed for MEDLINE]
8.

Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics.

Gobler CJ, Berry DL, Dyhrman ST, Wilhelm SW, Salamov A, Lobanov AV, Zhang Y, Collier JL, Wurch LL, Kustka AB, Dill BD, Shah M, VerBerkmoes NC, Kuo A, Terry A, Pangilinan J, Lindquist EA, Lucas S, Paulsen IT, Hattenrath-Lehmann TK, Talmage SC, Walker EA, Koch F, Burson AM, Marcoval MA, Tang YZ, Lecleir GR, Coyne KJ, Berg GM, Bertrand EM, Saito MA, Gladyshev VN, Grigoriev IV.

Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4352-7. doi: 10.1073/pnas.1016106108. Epub 2011 Feb 23.

PMID:
21368207
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The ecoresponsive genome of Daphnia pulex.

Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL.

Science. 2011 Feb 4;331(6017):555-61. doi: 10.1126/science.1197761.

PMID:
21292972
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.

Blanc G, Duncan G, Agarkova I, Borodovsky M, Gurnon J, Kuo A, Lindquist E, Lucas S, Pangilinan J, Polle J, Salamov A, Terry A, Yamada T, Dunigan DD, Grigoriev IV, Claverie JM, Van Etten JL.

Plant Cell. 2010 Sep;22(9):2943-55. doi: 10.1105/tpc.110.076406. Epub 2010 Sep 17.

PMID:
20852019
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genomic analysis of organismal complexity in the multicellular green alga Volvox carteri.

Prochnik SE, Umen J, Nedelcu AM, Hallmann A, Miller SM, Nishii I, Ferris P, Kuo A, Mitros T, Fritz-Laylin LK, Hellsten U, Chapman J, Simakov O, Rensing SA, Terry A, Pangilinan J, Kapitonov V, Jurka J, Salamov A, Shapiro H, Schmutz J, Grimwood J, Lindquist E, Lucas S, Grigoriev IV, Schmitt R, Kirk D, Rokhsar DS.

Science. 2010 Jul 9;329(5988):223-6. doi: 10.1126/science.1188800.

PMID:
20616280
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion.

Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, Schmutz J, Taga M, White GJ, Zhou S, Schwartz DC, Freitag M, Ma LJ, Danchin EG, Henrissat B, Coutinho PM, Nelson DR, Straney D, Napoli CA, Barker BM, Gribskov M, Rep M, Kroken S, Molnár I, Rensing C, Kennell JC, Zamora J, Farman ML, Selker EU, Salamov A, Shapiro H, Pangilinan J, Lindquist E, Lamers C, Grigoriev IV, Geiser DM, Covert SF, Temporini E, Vanetten HD.

PLoS Genet. 2009 Aug;5(8):e1000618. doi: 10.1371/journal.pgen.1000618. Epub 2009 Aug 28.

PMID:
19714214
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.

Worden AZ, Lee JH, Mock T, Rouzé P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV, Foulon E, Grimwood J, Gundlach H, Henrissat B, Napoli C, McDonald SM, Parker MS, Rombauts S, Salamov A, Von Dassow P, Badger JH, Coutinho PM, Demir E, Dubchak I, Gentemann C, Eikrem W, Gready JE, John U, Lanier W, Lindquist EA, Lucas S, Mayer KF, Moreau H, Not F, Otillar R, Panaud O, Pangilinan J, Paulsen I, Piegu B, Poliakov A, Robbens S, Schmutz J, Toulza E, Wyss T, Zelensky A, Zhou K, Armbrust EV, Bhattacharya D, Goodenough UW, Van de Peer Y, Grigoriev IV.

Science. 2009 Apr 10;324(5924):268-72. doi: 10.1126/science.1167222.

PMID:
19359590
[PubMed - indexed for MEDLINE]
Free Article
14.

Telomere organization in the ligninolytic basidiomycete Pleurotus ostreatus.

Pérez G, Pangilinan J, Pisabarro AG, Ramírez L.

Appl Environ Microbiol. 2009 Mar;75(5):1427-36. doi: 10.1128/AEM.01889-08. Epub 2008 Dec 29.

PMID:
19114509
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola.

Torriani SF, Goodwin SB, Kema GH, Pangilinan JL, McDonald BA.

Fungal Genet Biol. 2008 May;45(5):628-37. doi: 10.1016/j.fgb.2007.12.005. Epub 2007 Dec 23.

PMID:
18226935
[PubMed - indexed for MEDLINE]
16.

Use of warfarin in the patient with cancer.

Pangilinan JM, Pangilinan PH Jr, Worden FP.

J Support Oncol. 2007 Mar;5(3):131-6. Review. No abstract available.

PMID:
17410812
[PubMed - indexed for MEDLINE]
17.

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.

García Martín H, Ivanova N, Kunin V, Warnecke F, Barry KW, McHardy AC, Yeates C, He S, Salamov AA, Szeto E, Dalin E, Putnam NH, Shapiro HJ, Pangilinan JL, Rigoutsos I, Kyrpides NC, Blackall LL, McMahon KD, Hugenholtz P.

Nat Biotechnol. 2006 Oct;24(10):1263-9. Epub 2006 Sep 24.

PMID:
16998472
[PubMed - indexed for MEDLINE]

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