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Results: 17

1.

BIFI: a Taverna plugin for a simplified and user-friendly workflow platform.

Yildiz A, Dilaveroglu E, Visne I, Günay B, Sefer E, Weinhausel A, Rattay F, Goble CA, Pandey RV, Kriegner A.

BMC Res Notes. 2014 Oct 20;7:740. doi: 10.1186/1756-0500-7-740.

PMID:
25332013
[PubMed - in process]
Free PMC Article
2.

Nothing Special in the Specialist? Draft Genome Sequence of Cryomyces antarcticus, the Most Extremophilic Fungus from Antarctica.

Sterflinger K, Lopandic K, Pandey RV, Blasi B, Kriegner A.

PLoS One. 2014 Oct 8;9(10):e109908. doi: 10.1371/journal.pone.0109908. eCollection 2014.

PMID:
25296285
[PubMed - in process]
Free PMC Article
3.

Experimental evolution reveals habitat-specific fitness dynamics among Wolbachia clades in Drosophila melanogaster.

Versace E, Nolte V, Pandey RV, Tobler R, Schlötterer C.

Mol Ecol. 2014 Feb;23(4):802-14. doi: 10.1111/mec.12643.

PMID:
24387805
[PubMed - indexed for MEDLINE]
Free Article
4.

Intra-specific regulatory variation in Drosophila pseudoobscura.

Suvorov A, Nolte V, Pandey RV, Franssen SU, Futschik A, Schlötterer C.

PLoS One. 2013 Dec 27;8(12):e83547. doi: 10.1371/journal.pone.0083547. eCollection 2013.

PMID:
24386226
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

DistMap: a toolkit for distributed short read mapping on a Hadoop cluster.

Pandey RV, Schlötterer C.

PLoS One. 2013 Aug 23;8(8):e72614. doi: 10.1371/journal.pone.0072614. eCollection 2013.

PMID:
24009693
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data.

Pandey RV, Franssen SU, Futschik A, Schlötterer C.

Mol Ecol Resour. 2013 Jul;13(4):740-5. doi: 10.1111/1755-0998.12110. Epub 2013 Apr 25.

PMID:
23615333
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genome-wide patterns of natural variation reveal strong selective sweeps and ongoing genomic conflict in Drosophila mauritiana.

Nolte V, Pandey RV, Kofler R, Schlötterer C.

Genome Res. 2013 Jan;23(1):99-110. doi: 10.1101/gr.139873.112. Epub 2012 Oct 10.

PMID:
23051690
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Detecting selective sweeps from pooled next-generation sequencing samples.

Boitard S, Schlötterer C, Nolte V, Pandey RV, Futschik A.

Mol Biol Evol. 2012 Sep;29(9):2177-86. doi: 10.1093/molbev/mss090. Epub 2012 Mar 12.

PMID:
22411855
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq).

Kofler R, Pandey RV, Schlötterer C.

Bioinformatics. 2011 Dec 15;27(24):3435-6. doi: 10.1093/bioinformatics/btr589. Epub 2011 Oct 23.

PMID:
22025480
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Novel advances in cytochrome P450 research.

Singh D, Kashyap A, Pandey RV, Saini KS.

Drug Discov Today. 2011 Sep;16(17-18):793-9. doi: 10.1016/j.drudis.2011.08.003. Epub 2011 Aug 16. Review.

PMID:
21864709
[PubMed - indexed for MEDLINE]
11.

CANGS DB: a stand-alone web-based database tool for processing, managing and analyzing 454 data in biodiversity studies.

Pandey RV, Nolte V, Boenigk J, Schlötterer C.

BMC Res Notes. 2011 Jun 30;4:227. doi: 10.1186/1756-0500-4-227.

PMID:
21718534
[PubMed]
Free PMC Article
12.

PoPoolation DB: a user-friendly web-based database for the retrieval of natural polymorphisms in Drosophila.

Pandey RV, Kofler R, Orozco-terWengel P, Nolte V, Schlötterer C.

BMC Genet. 2011 Mar 2;12:27. doi: 10.1186/1471-2156-12-27.

PMID:
21366916
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals.

Kofler R, Orozco-terWengel P, De Maio N, Pandey RV, Nolte V, Futschik A, Kosiol C, Schlötterer C.

PLoS One. 2011 Jan 6;6(1):e15925. doi: 10.1371/journal.pone.0015925.

PMID:
21253599
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Contrasting seasonal niche separation between rare and abundant taxa conceals the extent of protist diversity.

Nolte V, Pandey RV, Jost S, Medinger R, Ottenwälder B, Boenigk J, Schlötterer C.

Mol Ecol. 2010 Jul;19(14):2908-15. doi: 10.1111/j.1365-294X.2010.04669.x. Epub 2010 Jul 1.

PMID:
20609083
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Diversity in a hidden world: potential and limitation of next-generation sequencing for surveys of molecular diversity of eukaryotic microorganisms.

Medinger R, Nolte V, Pandey RV, Jost S, Ottenwälder B, Schlötterer C, Boenigk J.

Mol Ecol. 2010 Mar;19 Suppl 1:32-40. doi: 10.1111/j.1365-294X.2009.04478.x.

PMID:
20331768
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

CANGS: a user-friendly utility for processing and analyzing 454 GS-FLX data in biodiversity studies.

Pandey RV, Nolte V, Schlötterer C.

BMC Res Notes. 2010 Jan 11;3:3. doi: 10.1186/1756-0500-3-3.

PMID:
20180949
[PubMed]
Free PMC Article
17.

EuSplice: a unified resource for the analysis of splice signals and alternative splicing in eukaryotic genes.

Bhasi A, Pandey RV, Utharasamy SP, Senapathy P.

Bioinformatics. 2007 Jul 15;23(14):1815-23. Epub 2007 Mar 7.

PMID:
17344236
[PubMed - indexed for MEDLINE]
Free Article

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