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Results: 1 to 20 of 372

1.

Discovery of key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal media using adaptive laboratory evolution.

LaCroix RA, Sandberg TE, O'Brien EJ, Utrilla J, Ebrahim A, Guzman GI, Szubin R, Palsson BO, Feist AM.

Appl Environ Microbiol. 2014 Oct 10. pii: AEM.02246-14. [Epub ahead of print]

PMID:
25304508
[PubMed - as supplied by publisher]
2.

A systems approach to predict oncometabolites via context-specific genome-scale metabolic networks.

Nam H, Campodonico M, Bordbar A, Hyduke DR, Kim S, Zielinski DC, Palsson BO.

PLoS Comput Biol. 2014 Sep 18;10(9):e1003837. doi: 10.1371/journal.pcbi.1003837. eCollection 2014 Sep.

PMID:
25232952
[PubMed - in process]
Free PMC Article
3.

Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale.

Liu JK, O Brien EJ, Lerman JA, Zengler K, Palsson BO, Feist AM.

BMC Syst Biol. 2014 Sep 18;8(1):110. [Epub ahead of print]

PMID:
25227965
[PubMed - as supplied by publisher]
Free PMC Article
4.

Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli.

Seo SW, Kim D, Latif H, O'Brien EJ, Szubin R, Palsson BO.

Nat Commun. 2014 Sep 15;5:4910. doi: 10.1038/ncomms5910.

PMID:
25222563
[PubMed - in process]
5.

Metabolomic analysis of platelets during storage: a comparison between apheresis- and buffy coat-derived platelet concentrates.

Paglia G, Sigurjónsson OE, Rolfsson O, Hansen MB, Brynjólfsson S, Gudmundsson S, Palsson BO.

Transfusion. 2014 Aug 25. doi: 10.1111/trf.12834. [Epub ahead of print]

PMID:
25156572
[PubMed - as supplied by publisher]
6.

A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933.

Latif H, Li HJ, Charusanti P, Palsson BØ, Aziz RK.

Genome Announc. 2014 Aug 14;2(4). pii: e00821-14. doi: 10.1128/genomeA.00821-14.

PMID:
25125650
[PubMed]
Free PMC Article
7.

Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path.

Campodonico MA, Andrews BA, Asenjo JA, Palsson BO, Feist AM.

Metab Eng. 2014 Sep;25:140-58. doi: 10.1016/j.ymben.2014.07.009. Epub 2014 Jul 28.

PMID:
25080239
[PubMed - in process]
8.

Evolution of Escherichia coli to 42 °C and subsequent genetic engineering reveals adaptive mechanisms and novel mutations.

Sandberg TE, Pedersen M, LaCroix RA, Ebrahim A, Bonde M, Herrgard MJ, Palsson BO, Sommer M, Feist AM.

Mol Biol Evol. 2014 Oct;31(10):2647-62. doi: 10.1093/molbev/msu209. Epub 2014 Jul 10.

PMID:
25015645
[PubMed - in process]
Free PMC Article
9.

Minimal metabolic pathway structure is consistent with associated biomolecular interactions.

Bordbar A, Nagarajan H, Lewis NE, Latif H, Ebrahim A, Federowicz S, Schellenberger J, Palsson BO.

Mol Syst Biol. 2014 Jul 1;10(7):737. doi: 10.15252/msb.20145243.

PMID:
24987116
[PubMed - in process]
Free Article
10.

Genetics. Predicting microbial growth.

Monk J, Palsson BO.

Science. 2014 Jun 27;344(6191):1448-9. doi: 10.1126/science.1253388. No abstract available.

PMID:
24970063
[PubMed - indexed for MEDLINE]
11.

Biochemical characterization of human gluconokinase and the proposed metabolic impact of gluconic acid as determined by constraint based metabolic network analysis.

Rohatgi N, Nielsen TK, Bjørn SP, Axelsson I, Paglia G, Voldborg BG, Palsson BO, Rolfsson Ó.

PLoS One. 2014 Jun 4;9(6):e98760. doi: 10.1371/journal.pone.0098760. eCollection 2014.

PMID:
24896608
[PubMed - in process]
Free PMC Article
12.

Comprehensive metabolomic study of platelets reveals the expression of discrete metabolic phenotypes during storage.

Paglia G, Sigurjónsson OE, Rolfsson O, Valgeirsdottir S, Hansen MB, Brynjólfsson S, Gudmundsson S, Palsson BO.

Transfusion. 2014 Nov;54(11):2911-2923. doi: 10.1111/trf.12710. Epub 2014 May 19.

PMID:
24840017
[PubMed - as supplied by publisher]
13.

Optimizing genome-scale network reconstructions.

Monk J, Nogales J, Palsson BO.

Nat Biotechnol. 2014 May;32(5):447-52. doi: 10.1038/nbt.2870. No abstract available.

PMID:
24811519
[PubMed - in process]
14.

Ion mobility derived collision cross sections to support metabolomics applications.

Paglia G, Williams JP, Menikarachchi L, Thompson JW, Tyldesley-Worster R, Halldórsson S, Rolfsson O, Moseley A, Grant D, Langridge J, Palsson BO, Astarita G.

Anal Chem. 2014 Apr 15;86(8):3985-93. doi: 10.1021/ac500405x. Epub 2014 Mar 28.

PMID:
24640936
[PubMed - in process]
15.

Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol.

Cheng KK, Lee BS, Masuda T, Ito T, Ikeda K, Hirayama A, Deng L, Dong J, Shimizu K, Soga T, Tomita M, Palsson BO, Robert M.

Nat Commun. 2014;5:3233. doi: 10.1038/ncomms4233.

PMID:
24481126
[PubMed - in process]
16.

Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance.

Thomas A, Rahmanian S, Bordbar A, Palsson BØ, Jamshidi N.

Sci Rep. 2014 Jan 29;4:3925. doi: 10.1038/srep03925.

PMID:
24473230
[PubMed - in process]
Free PMC Article
17.

Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states.

Cho BK, Kim D, Knight EM, Zengler K, Palsson BO.

BMC Biol. 2014 Jan 24;12:4. doi: 10.1186/1741-7007-12-4.

PMID:
24461193
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Constraint-based models predict metabolic and associated cellular functions.

Bordbar A, Monk JM, King ZA, Palsson BO.

Nat Rev Genet. 2014 Feb;15(2):107-20. doi: 10.1038/nrg3643. Epub 2014 Jan 16. Review.

PMID:
24430943
[PubMed - indexed for MEDLINE]
19.

Capsule deletion via a λ-Red knockout system perturbs biofilm formation and fimbriae expression in Klebsiella pneumoniae MGH 78578.

Huang TW, Lam I, Chang HY, Tsai SF, Palsson BO, Charusanti P.

BMC Res Notes. 2014 Jan 8;7:13. doi: 10.1186/1756-0500-7-13.

PMID:
24398052
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Effects of abiotic stressors on lutein production in the green microalga Dunaliella salina.

Fu W, Paglia G, Magnúsdóttir M, Steinarsdóttir EA, Gudmundsson S, Palsson BØ, Andrésson ÓS, Brynjólfsson S.

Microb Cell Fact. 2014 Jan 8;13:3. doi: 10.1186/1475-2859-13-3.

PMID:
24397433
[PubMed - indexed for MEDLINE]
Free PMC Article

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