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Results: 1 to 20 of 366

1.

Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path.

Campodonico MA, Andrews BA, Asenjo JA, Palsson BO, Feist AM.

Metab Eng. 2014 Jul 28. pii: S1096-7176(14)00100-1. doi: 10.1016/j.ymben.2014.07.009. [Epub ahead of print]

PMID:
25080239
[PubMed - as supplied by publisher]
2.

Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations.

Sandberg TE, Pedersen M, LaCroix RA, Ebrahim A, Bonde M, Herrgard MJ, Palsson BO, Sommer M, Feist AM.

Mol Biol Evol. 2014 Jul 10. pii: msu209. [Epub ahead of print]

PMID:
25015645
[PubMed - as supplied by publisher]
3.

Minimal metabolic pathway structure is consistent with associated biomolecular interactions.

Bordbar A, Nagarajan H, Lewis NE, Latif H, Ebrahim A, Federowicz S, Schellenberger J, Palsson BO.

Mol Syst Biol. 2014 Jul 1;10(7):737. doi: 10.15252/msb.20145243.

PMID:
24987116
[PubMed - in process]
Free Article
4.

Genetics. Predicting microbial growth.

Monk J, Palsson BO.

Science. 2014 Jun 27;344(6191):1448-9. doi: 10.1126/science.1253388. No abstract available.

PMID:
24970063
[PubMed - indexed for MEDLINE]
5.

Biochemical characterization of human gluconokinase and the proposed metabolic impact of gluconic acid as determined by constraint based metabolic network analysis.

Rohatgi N, Nielsen TK, Bjørn SP, Axelsson I, Paglia G, Voldborg BG, Palsson BO, Rolfsson Ó.

PLoS One. 2014 Jun 4;9(6):e98760. doi: 10.1371/journal.pone.0098760. eCollection 2014.

PMID:
24896608
[PubMed - in process]
Free PMC Article
6.

Comprehensive metabolomic study of platelets reveals the expression of discrete metabolic phenotypes during storage.

Paglia G, Sigurjónsson OE, Rolfsson O, Valgeirsdottir S, Hansen MB, Brynjólfsson S, Gudmundsson S, Palsson BO.

Transfusion. 2014 May 19. doi: 10.1111/trf.12710. [Epub ahead of print]

PMID:
24840017
[PubMed - as supplied by publisher]
7.

Optimizing genome-scale network reconstructions.

Monk J, Nogales J, Palsson BO.

Nat Biotechnol. 2014 May;32(5):447-52. doi: 10.1038/nbt.2870. No abstract available.

PMID:
24811519
[PubMed - in process]
8.

Ion mobility derived collision cross sections to support metabolomics applications.

Paglia G, Williams JP, Menikarachchi L, Thompson JW, Tyldesley-Worster R, Halldórsson S, Rolfsson O, Moseley A, Grant D, Langridge J, Palsson BO, Astarita G.

Anal Chem. 2014 Apr 15;86(8):3985-93. doi: 10.1021/ac500405x. Epub 2014 Mar 28.

PMID:
24640936
[PubMed - in process]
9.

Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol.

Cheng KK, Lee BS, Masuda T, Ito T, Ikeda K, Hirayama A, Deng L, Dong J, Shimizu K, Soga T, Tomita M, Palsson BO, Robert M.

Nat Commun. 2014;5:3233. doi: 10.1038/ncomms4233.

PMID:
24481126
[PubMed - in process]
10.

Network reconstruction of platelet metabolism identifies metabolic signature for aspirin resistance.

Thomas A, Rahmanian S, Bordbar A, Palsson BØ, Jamshidi N.

Sci Rep. 2014 Jan 29;4:3925. doi: 10.1038/srep03925.

PMID:
24473230
[PubMed - in process]
Free PMC Article
11.

Genome-scale reconstruction of the sigma factor network in Escherichia coli: topology and functional states.

Cho BK, Kim D, Knight EM, Zengler K, Palsson BO.

BMC Biol. 2014 Jan 24;12:4. doi: 10.1186/1741-7007-12-4.

PMID:
24461193
[PubMed - in process]
Free PMC Article
12.

Constraint-based models predict metabolic and associated cellular functions.

Bordbar A, Monk JM, King ZA, Palsson BO.

Nat Rev Genet. 2014 Feb;15(2):107-20. doi: 10.1038/nrg3643. Epub 2014 Jan 16. Review.

PMID:
24430943
[PubMed - indexed for MEDLINE]
13.

Capsule deletion via a λ-Red knockout system perturbs biofilm formation and fimbriae expression in Klebsiella pneumoniae MGH 78578.

Huang TW, Lam I, Chang HY, Tsai SF, Palsson BO, Charusanti P.

BMC Res Notes. 2014 Jan 8;7:13. doi: 10.1186/1756-0500-7-13.

PMID:
24398052
[PubMed - in process]
Free PMC Article
14.

Effects of abiotic stressors on lutein production in the green microalga Dunaliella salina.

Fu W, Paglia G, Magnúsdóttir M, Steinarsdóttir EA, Gudmundsson S, Palsson BØ, Andrésson ÓS, Brynjólfsson S.

Microb Cell Fact. 2014 Jan 8;13:3. doi: 10.1186/1475-2859-13-3.

PMID:
24397433
[PubMed - in process]
Free PMC Article
15.

Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments.

Monk JM, Charusanti P, Aziz RK, Lerman JA, Premyodhin N, Orth JD, Feist AM, Palsson BØ.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20338-43. doi: 10.1073/pnas.1307797110. Epub 2013 Nov 25.

PMID:
24277855
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association.

Nagarajan H, Embree M, Rotaru AE, Shrestha PM, Feist AM, Palsson BØ, Lovley DR, Zengler K.

Nat Commun. 2013;4:2809. doi: 10.1038/ncomms3809.

PMID:
24264237
[PubMed - indexed for MEDLINE]
17.

A model-driven quantitative metabolomics analysis of aerobic and anaerobic metabolism in E. coli K-12 MG1655 that is biochemically and thermodynamically consistent.

McCloskey D, Gangoiti JA, King ZA, Naviaux RK, Barshop BA, Palsson BO, Feist AM.

Biotechnol Bioeng. 2014 Apr;111(4):803-15. doi: 10.1002/bit.25133. Epub 2013 Nov 19.

PMID:
24249002
[PubMed - in process]
18.

Systems biology and biotechnology of Streptomyces species for the production of secondary metabolites.

Hwang KS, Kim HU, Charusanti P, Palsson BØ, Lee SY.

Biotechnol Adv. 2014 Mar-Apr;32(2):255-68. doi: 10.1016/j.biotechadv.2013.10.008. Epub 2013 Nov 2.

PMID:
24189093
[PubMed - in process]
19.

Antibacterial mechanisms identified through structural systems pharmacology.

Chang RL, Xie L, Bourne PE, Palsson BO.

BMC Syst Biol. 2013 Oct 10;7:102. doi: 10.1186/1752-0509-7-102.

PMID:
24112686
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome-scale models of metabolism and gene expression extend and refine growth phenotype prediction.

O'Brien EJ, Lerman JA, Chang RL, Hyduke DR, Palsson BØ.

Mol Syst Biol. 2013 Oct 1;9:693. doi: 10.1038/msb.2013.52.

PMID:
24084808
[PubMed - indexed for MEDLINE]
Free PMC Article

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