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Results: 1 to 20 of 377

1.

Computing the functional proteome: recent progress and future prospects for genome-scale models.

O'Brien EJ, Palsson BO.

Curr Opin Biotechnol. 2015 Jan 7;34C:125-134. doi: 10.1016/j.copbio.2014.12.017. [Epub ahead of print] Review.

PMID:
25576845
[PubMed - as supplied by publisher]
2.

Next-generation genome-scale models for metabolic engineering.

King ZA, Lloyd CJ, Feist AM, Palsson BO.

Curr Opin Biotechnol. 2015 Jan 6;35C:23-29. doi: 10.1016/j.copbio.2014.12.016. [Epub ahead of print] Review.

PMID:
25575024
[PubMed - as supplied by publisher]
3.

Model-driven discovery of underground metabolic functions in Escherichia coli.

Guzmán GI, Utrilla J, Nurk S, Brunk E, Monk JM, Ebrahim A, Palsson BO, Feist AM.

Proc Natl Acad Sci U S A. 2015 Jan 20;112(3):929-34. doi: 10.1073/pnas.1414218112. Epub 2015 Jan 6.

PMID:
25564669
[PubMed - in process]
4.

Improving collaboration by standardization efforts in systems biology.

Dräger A, Palsson BØ.

Front Bioeng Biotechnol. 2014 Dec 8;2:61. doi: 10.3389/fbioe.2014.00061. eCollection 2014. Review.

PMID:
25538939
[PubMed]
Free PMC Article
5.

Ion mobility-derived collision cross section as an additional measure for lipid fingerprinting and identification.

Paglia G, Angel P, Williams JP, Richardson K, Olivos HJ, Thompson JW, Menikarachchi L, Lai S, Walsh C, Moseley A, Plumb RS, Grant DF, Palsson BO, Langridge J, Geromanos S, Astarita G.

Anal Chem. 2015 Jan 20;87(2):1137-44. doi: 10.1021/ac503715v. Epub 2014 Dec 29.

PMID:
25495617
[PubMed - in process]
Free PMC Article
6.

Use of Adaptive Laboratory Evolution To Discover Key Mutations Enabling Rapid Growth of Escherichia coli K-12 MG1655 on Glucose Minimal Medium.

LaCroix RA, Sandberg TE, O'Brien EJ, Utrilla J, Ebrahim A, Guzman GI, Szubin R, Palsson BO, Feist AM.

Appl Environ Microbiol. 2015 Jan 1;81(1):17-30. doi: 10.1128/AEM.02246-14. Epub 2014 Oct 10.

PMID:
25304508
[PubMed - in process]
7.

A systems approach to predict oncometabolites via context-specific genome-scale metabolic networks.

Nam H, Campodonico M, Bordbar A, Hyduke DR, Kim S, Zielinski DC, Palsson BO.

PLoS Comput Biol. 2014 Sep 18;10(9):e1003837. doi: 10.1371/journal.pcbi.1003837. eCollection 2014 Sep.

PMID:
25232952
[PubMed - in process]
Free PMC Article
8.

Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale.

Liu JK, O Brien EJ, Lerman JA, Zengler K, Palsson BO, Feist AM.

BMC Syst Biol. 2014 Sep 18;8(1):110. [Epub ahead of print]

PMID:
25227965
[PubMed - as supplied by publisher]
Free PMC Article
9.

Deciphering Fur transcriptional regulatory network highlights its complex role beyond iron metabolism in Escherichia coli.

Seo SW, Kim D, Latif H, O'Brien EJ, Szubin R, Palsson BO.

Nat Commun. 2014 Sep 15;5:4910. doi: 10.1038/ncomms5910.

PMID:
25222563
[PubMed - in process]
10.

Metabolomic analysis of platelets during storage: a comparison between apheresis- and buffy coat-derived platelet concentrates.

Paglia G, Sigurjónsson OE, Rolfsson O, Hansen MB, Brynjólfsson S, Gudmundsson S, Palsson BO.

Transfusion. 2014 Aug 25. doi: 10.1111/trf.12834. [Epub ahead of print]

PMID:
25156572
[PubMed - as supplied by publisher]
11.

A Gapless, Unambiguous Genome Sequence of the Enterohemorrhagic Escherichia coli O157:H7 Strain EDL933.

Latif H, Li HJ, Charusanti P, Palsson BØ, Aziz RK.

Genome Announc. 2014 Aug 14;2(4). pii: e00821-14. doi: 10.1128/genomeA.00821-14.

PMID:
25125650
[PubMed]
Free PMC Article
12.

Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path.

Campodonico MA, Andrews BA, Asenjo JA, Palsson BO, Feist AM.

Metab Eng. 2014 Sep;25:140-58. doi: 10.1016/j.ymben.2014.07.009. Epub 2014 Jul 28.

PMID:
25080239
[PubMed - in process]
13.

Evolution of Escherichia coli to 42 °C and subsequent genetic engineering reveals adaptive mechanisms and novel mutations.

Sandberg TE, Pedersen M, LaCroix RA, Ebrahim A, Bonde M, Herrgard MJ, Palsson BO, Sommer M, Feist AM.

Mol Biol Evol. 2014 Oct;31(10):2647-62. doi: 10.1093/molbev/msu209. Epub 2014 Jul 10.

PMID:
25015645
[PubMed - in process]
Free PMC Article
14.

Minimal metabolic pathway structure is consistent with associated biomolecular interactions.

Bordbar A, Nagarajan H, Lewis NE, Latif H, Ebrahim A, Federowicz S, Schellenberger J, Palsson BO.

Mol Syst Biol. 2014 Jul 1;10:737. doi: 10.15252/msb.20145243.

PMID:
24987116
[PubMed - in process]
Free PMC Article
15.

Genetics. Predicting microbial growth.

Monk J, Palsson BO.

Science. 2014 Jun 27;344(6191):1448-9. doi: 10.1126/science.1253388. No abstract available.

PMID:
24970063
[PubMed - indexed for MEDLINE]
16.

Biochemical characterization of human gluconokinase and the proposed metabolic impact of gluconic acid as determined by constraint based metabolic network analysis.

Rohatgi N, Nielsen TK, Bjørn SP, Axelsson I, Paglia G, Voldborg BG, Palsson BO, Rolfsson Ó.

PLoS One. 2014 Jun 4;9(6):e98760. doi: 10.1371/journal.pone.0098760. eCollection 2014.

PMID:
24896608
[PubMed - in process]
Free PMC Article
17.

Comprehensive metabolomic study of platelets reveals the expression of discrete metabolic phenotypes during storage.

Paglia G, Sigurjónsson ÓE, Rolfsson Ó, Valgeirsdottir S, Hansen MB, Brynjólfsson S, Gudmundsson S, Palsson BO.

Transfusion. 2014 Nov;54(11):2911-23. doi: 10.1111/trf.12710. Epub 2014 May 19.

PMID:
24840017
[PubMed - in process]
18.

Optimizing genome-scale network reconstructions.

Monk J, Nogales J, Palsson BO.

Nat Biotechnol. 2014 May;32(5):447-52. doi: 10.1038/nbt.2870. No abstract available.

PMID:
24811519
[PubMed - in process]
19.

Ion mobility derived collision cross sections to support metabolomics applications.

Paglia G, Williams JP, Menikarachchi L, Thompson JW, Tyldesley-Worster R, Halldórsson S, Rolfsson O, Moseley A, Grant D, Langridge J, Palsson BO, Astarita G.

Anal Chem. 2014 Apr 15;86(8):3985-93. doi: 10.1021/ac500405x. Epub 2014 Mar 28.

PMID:
24640936
[PubMed - in process]
20.

Global metabolic network reorganization by adaptive mutations allows fast growth of Escherichia coli on glycerol.

Cheng KK, Lee BS, Masuda T, Ito T, Ikeda K, Hirayama A, Deng L, Dong J, Shimizu K, Soga T, Tomita M, Palsson BO, Robert M.

Nat Commun. 2014;5:3233. doi: 10.1038/ncomms4233.

PMID:
24481126
[PubMed - in process]

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