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Results: 1 to 20 of 39

1.

Ecological genomics in Xanthomonas: the nature of genetic adaptation with homologous recombination and host shifts.

Huang CL, Pu PH, Huang HJ, Sung HM, Liaw HJ, Chen YM, Chen CM, Huang MB, Osada N, Gojobori T, Pai TW, Chen YT, Hwang CC, Chiang TY.

BMC Genomics. 2015 Dec;16(1):1369. doi: 10.1186/s12864-015-1369-8. Epub 2015 Mar 15.

2.

Identification of conserved and polymorphic STRs for personal genomes.

Chen CM, Sio CP, Lu YL, Chang HT, Hu CH, Pai TW.

BMC Genomics. 2014;15 Suppl 10:S3. doi: 10.1186/1471-2164-15-S10-S3. Epub 2014 Dec 12.

3.

Cross-species identification of in silico microsatellite biomarkers for genetic disease.

Chang HT, Lo YY, Huang JL, Lin WY, Pai TW.

Biomedicine (Taipei). 2014;4:14. Epub 2014 Aug 2.

4.

Bistable cholesteric liquid crystal light shutter with multielectrode driving.

Li CC, Tseng HY, Pai TW, Wu YC, Hsu WH, Jau HC, Chen CW, Lin TH.

Appl Opt. 2014 Aug 1;53(22):E33-7. doi: 10.1364/AO.53.000E33.

PMID:
25090351
5.

Machine learning-based methods for prediction of linear B-cell epitopes.

Wang HW, Pai TW.

Methods Mol Biol. 2014;1184:217-36. doi: 10.1007/978-1-4939-1115-8_12. Review.

PMID:
25048127
6.

Hypoxia-inducible factor 2 alpha is essential for hepatic outgrowth and functions via the regulation of leg1 transcription in the zebrafish embryo.

Lin TY, Chou CF, Chung HY, Chiang CY, Li CH, Wu JL, Lin HJ, Pai TW, Hu CH, Tzou WS.

PLoS One. 2014 Jul 7;9(7):e101980. doi: 10.1371/journal.pone.0101980. eCollection 2014.

7.

Identification of simple sequence repeat biomarkers through cross-species comparison in a tag cloud representation.

Huang JL, Chang HT, Cheng R, Hsu HH, Pai TW.

Biomed Res Int. 2014;2014:678971. doi: 10.1155/2014/678971. Epub 2014 Mar 31.

8.

Stochastic simulation of notch signaling reveals novel factors that mediate the differentiation of neural stem cells.

Tzou WS, Lo YT, Pai TW, Hu CH, Li CH.

J Comput Biol. 2014 Jul;21(7):548-67. doi: 10.1089/cmb.2014.0022. Epub 2014 May 5.

PMID:
24798230
9.

Identifying significant associations of orthologous simple sequence repeats with gene ontologies.

Chen CM, Pai TW, Chuang CS, Huang JL, Tzou WS, Hu CH.

Int J Data Min Bioinform. 2014;9(1):37-51.

PMID:
24783407
10.

A local average distance descriptor for flexible protein structure comparison.

Wang HW, Chu CH, Wang WC, Pai TW.

BMC Bioinformatics. 2014 Apr 2;15:95. doi: 10.1186/1471-2105-15-95.

11.

Gene Ontology based housekeeping gene selection for RNA-seq normalization.

Chen CM, Lu YL, Sio CP, Wu GC, Tzou WS, Pai TW.

Methods. 2014 Jun 1;67(3):354-63. doi: 10.1016/j.ymeth.2014.01.019. Epub 2014 Feb 18.

PMID:
24561167
12.

Molecular evolution of multiple-level control of heme biosynthesis pathway in animal kingdom.

Tzou WS, Chu Y, Lin TY, Hu CH, Pai TW, Liu HF, Lin HJ, Cases I, Rojas A, Sanchez M, You ZY, Hsu MW.

PLoS One. 2014 Jan 28;9(1):e86718. doi: 10.1371/journal.pone.0086718. eCollection 2014.

13.

Homologous synteny block detection based on suffix tree algorithms.

Chen YL, Chen CM, Pai TW, Leong HW, Chong KF.

J Bioinform Comput Biol. 2013 Dec;11(6):1343004. doi: 10.1142/S021972001343004X. Epub 2013 Dec 2.

PMID:
24372033
14.

Gene expression rate comparison for multiple high-throughput datasets.

Chen CM, Shih TH, Pai TW, Liu ZL, Chang MD, Hu CH.

IET Syst Biol. 2013 Oct;7(5):135-42. doi: 10.1049/iet-syb.2012.0060.

PMID:
24067413
15.

Protein crystallization prediction with AdaBoost.

Hsieh CW, Hsu HH, Pai TW.

Int J Data Min Bioinform. 2013;7(2):214-27.

PMID:
23777177
16.

Intelligent informatics in biomedicine.

Chang HT, Calogero RA, Draghici S, Ray O, Pai TW.

Biomed Res Int. 2013;2013:185839. doi: 10.1155/2013/185839. Epub 2013 Apr 22. No abstract available.

17.

Protein-ligand binding region prediction (PLB-SAVE) based on geometric features and CUDA acceleration.

Lo YT, Wang HW, Pai TW, Tzou WS, Hsu HH, Chang HT.

BMC Bioinformatics. 2013;14 Suppl 4:S4. doi: 10.1186/1471-2105-14-S4-S4. Epub 2013 Mar 8.

18.

Prediction of conformational epitopes with the use of a knowledge-based energy function and geometrically related neighboring residue characteristics.

Lo YT, Pai TW, Wu WK, Chang HT.

BMC Bioinformatics. 2013;14 Suppl 4:S3. doi: 10.1186/1471-2105-14-S4-S3. Epub 2013 Mar 8.

19.

In silico prediction and in vitro characterization of multifunctional human RNase3.

Lien PC, Kuo PH, Chen CJ, Chang HH, Fang SL, Wu WS, Lai YK, Pai TW, Chang MD.

Biomed Res Int. 2013;2013:170398. doi: 10.1155/2013/170398. Epub 2013 Jan 17.

20.

Chemoattraction of macrophages by secretory molecules derived from cells expressing the signal peptide of eosinophil cationic protein.

Liu YS, Tsai PW, Wang Y, Fan TC, Hsieh CH, Chang MD, Pai TW, Huang CF, Lan CY, Chang HT.

BMC Syst Biol. 2012 Aug 20;6:105. doi: 10.1186/1752-0509-6-105.

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