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Results: 18

1.

RNA-seq: impact of RNA degradation on transcript quantification.

Gallego Romero I, Pai AA, Tung J, Gilad Y.

BMC Biol. 2014 May 30;12:42. doi: 10.1186/1741-7007-12-42.

PMID:
24885439
[PubMed - in process]
Free PMC Article
2.

Perforator plus fasciocutaneous flaps in the reconstruction of post-burn flexion contractures of the knee joint.

Gupta M, Pai AA, Setty RR, Sawarappa R, Majumdar BK, Banerjee T, Kanoi A, Bhattacharya A.

J Clin Diagn Res. 2013 May;7(5):896-901. doi: 10.7860/JCDR/2013/5324.2968. Epub 2013 May 1.

PMID:
23814737
[PubMed]
Free PMC Article
3.

Controls of nucleosome positioning in the human genome.

Gaffney DJ, McVicker G, Pai AA, Fondufe-Mittendorf YN, Lewellen N, Michelini K, Widom J, Gilad Y, Pritchard JK.

PLoS Genet. 2012;8(11):e1003036. doi: 10.1371/journal.pgen.1003036. Epub 2012 Nov 15.

PMID:
23166509
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels.

Pai AA, Cain CE, Mizrahi-Man O, De Leon S, Lewellen N, Veyrieras JB, Degner JF, Gaffney DJ, Pickrell JK, Stephens M, Pritchard JK, Gilad Y.

PLoS Genet. 2012;8(10):e1003000. doi: 10.1371/journal.pgen.1003000. Epub 2012 Oct 11.

PMID:
23071454
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Regulatory element copy number differences shape primate expression profiles.

Iskow RC, Gokcumen O, Abyzov A, Malukiewicz J, Zhu Q, Sukumar AT, Pai AA, Mills RE, Habegger L, Cusanovich DA, Rubel MA, Perry GH, Gerstein M, Stone AC, Gilad Y, Lee C.

Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12656-61. doi: 10.1073/pnas.1205199109. Epub 2012 Jul 13.

PMID:
22797897
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

DNase‚ÄČI sensitivity QTLs are a major determinant of human expression variation.

Degner JF, Pai AA, Pique-Regi R, Veyrieras JB, Gaffney DJ, Pickrell JK, De Leon S, Michelini K, Lewellen N, Crawford GE, Stephens M, Gilad Y, Pritchard JK.

Nature. 2012 Feb 5;482(7385):390-4. doi: 10.1038/nature10808.

PMID:
22307276
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Dissecting the regulatory architecture of gene expression QTLs.

Gaffney DJ, Veyrieras JB, Degner JF, Pique-Regi R, Pai AA, Crawford GE, Stephens M, Gilad Y, Pritchard JK.

Genome Biol. 2012 Jan 31;13(1):R7. doi: 10.1186/gb-2012-13-1-r7.

PMID:
22293038
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes.

Cusanovich DA, Billstrand C, Zhou X, Chavarria C, De Leon S, Michelini K, Pai AA, Ober C, Gilad Y.

Hum Mol Genet. 2012 May 1;21(9):2111-23. doi: 10.1093/hmg/dds021. Epub 2012 Jan 27.

PMID:
22286170
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection.

Barreiro LB, Tailleux L, Pai AA, Gicquel B, Marioni JC, Gilad Y.

Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1204-9. doi: 10.1073/pnas.1115761109. Epub 2012 Jan 10.

PMID:
22233810
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A genome-wide study of DNA methylation patterns and gene expression levels in multiple human and chimpanzee tissues.

Pai AA, Bell JT, Marioni JC, Pritchard JK, Gilad Y.

PLoS Genet. 2011 Feb;7(2):e1001316. doi: 10.1371/journal.pgen.1001316. Epub 2011 Feb 24.

PMID:
21383968
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Dissecting the within-Africa ancestry of populations of African descent in the Americas.

Stefflova K, Dulik MC, Barnholtz-Sloan JS, Pai AA, Walker AH, Rebbeck TR.

PLoS One. 2011 Jan 6;6(1):e14495. doi: 10.1371/journal.pone.0014495.

PMID:
21253579
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines.

Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, Gilad Y, Pritchard JK.

Genome Biol. 2011;12(1):R10. doi: 10.1186/gb-2011-12-1-r10. Epub 2011 Jan 20. Erratum in: Genome Biol. 2011;12(6):405.

PMID:
21251332
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Noisy splicing drives mRNA isoform diversity in human cells.

Pickrell JK, Pai AA, Gilad Y, Pritchard JK.

PLoS Genet. 2010 Dec 9;6(12):e1001236. doi: 10.1371/journal.pgen.1001236.

PMID:
21151575
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data.

Pique-Regi R, Degner JF, Pai AA, Gaffney DJ, Gilad Y, Pritchard JK.

Genome Res. 2011 Mar;21(3):447-55. doi: 10.1101/gr.112623.110. Epub 2010 Nov 24.

PMID:
21106904
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Understanding mechanisms underlying human gene expression variation with RNA sequencing.

Pickrell JK, Marioni JC, Pai AA, Degner JF, Engelhardt BE, Nkadori E, Veyrieras JB, Stephens M, Gilad Y, Pritchard JK.

Nature. 2010 Apr 1;464(7289):768-72. doi: 10.1038/nature08872. Epub 2010 Mar 10.

PMID:
20220758
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Evaluation of group genetic ancestry of populations from Philadelphia and Dakar in the context of sex-biased admixture in the Americas.

Stefflova K, Dulik MC, Pai AA, Walker AH, Zeigler-Johnson CM, Gueye SM, Schurr TG, Rebbeck TR.

PLoS One. 2009 Nov 25;4(11):e7842. doi: 10.1371/journal.pone.0007842.

PMID:
19946364
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data.

Degner JF, Marioni JC, Pai AA, Pickrell JK, Nkadori E, Gilad Y, Pritchard JK.

Bioinformatics. 2009 Dec 15;25(24):3207-12. doi: 10.1093/bioinformatics/btp579. Epub 2009 Oct 6.

PMID:
19808877
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genetic variation in the enigmatic Altaian Kazakhs of South-Central Russia: insights into Turkic population history.

Gokcumen O, Dulik MC, Pai AA, Zhadanov SI, Rubinstein S, Osipova LP, Andreenkov OV, Tabikhanova LE, Gubina MA, Labuda D, Schurr TG.

Am J Phys Anthropol. 2008 Jul;136(3):278-93. doi: 10.1002/ajpa.20802.

PMID:
18322915
[PubMed - indexed for MEDLINE]

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