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Items: 20

1.

MSRE-HTPrimer: a high-throughput and genome-wide primer design pipeline optimized for epigenetic research.

Pandey RV, Walter P, Kallmeyer R, Beikircher G, Pabinger S, Kriegner A, Weinhäusel A.

Clin Epigenetics. 2016 Mar 5;8:26. doi: 10.1186/s13148-016-0190-9. eCollection 2016.

2.

MutAid: Sanger and NGS Based Integrated Pipeline for Mutation Identification, Validation and Annotation in Human Molecular Genetics.

Pandey RV, Pabinger S, Kriegner A, Weinhäusel A.

PLoS One. 2016 Feb 3;11(2):e0147697. doi: 10.1371/journal.pone.0147697. eCollection 2016.

3.

ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research.

Pandey RV, Pabinger S, Kriegner A, Weinhäusel A.

BMC Bioinformatics. 2016 Feb 2;17:56. doi: 10.1186/s12859-016-0915-y.

4.

Draft Genome Sequence of Tannerella forsythia Type Strain ATCC 43037.

Friedrich V, Pabinger S, Chen T, Messner P, Dewhirst FE, Schäffer C.

Genome Announc. 2015 Jun 11;3(3). pii: e00660-15. doi: 10.1128/genomeA.00660-15.

5.

Outer membrane vesicles of Tannerella forsythia: biogenesis, composition, and virulence.

Friedrich V, Gruber C, Nimeth I, Pabinger S, Sekot G, Posch G, Altmann F, Messner P, Andrukhov O, Schäffer C.

Mol Oral Microbiol. 2015 Dec;30(6):451-73. doi: 10.1111/omi.12104. Epub 2015 Jun 16.

6.

Geographic origin is not supported by the genetic variability found in a large living collection of Jatropha curcas with accessions from three continents.

Maghuly F, Jankowicz-Cieslak J, Pabinger S, Till BJ, Laimer M.

Biotechnol J. 2015 Apr;10(4):536-51. doi: 10.1002/biot.201400196. Epub 2015 Jan 19.

7.

Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages.

Dander A, Baldauf M, Sperk M, Pabinger S, Hiltpolt B, Trajanoski Z.

BMC Bioinformatics. 2014 Sep 18;15:306. doi: 10.1186/1471-2105-15-306.

8.

SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases.

Schweiger D, Trajanoski Z, Pabinger S.

BMC Bioinformatics. 2014 Aug 15;15:279. doi: 10.1186/1471-2105-15-279.

9.

MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data.

Pabinger S, Snajder R, Hardiman T, Willi M, Dander A, Trajanoski Z.

Database (Oxford). 2014 Feb 14;2014:bau004. doi: 10.1093/database/bau004. Print 2014.

10.

SeqBench: integrated solution for the management and analysis of exome sequencing data.

Dander A, Pabinger S, Sperk M, Fischer M, Stocker G, Trajanoski Z.

BMC Res Notes. 2014 Jan 20;7:43. doi: 10.1186/1756-0500-7-43.

11.

[COMMODE] a large-scale database of molecular descriptors using compounds from PubChem.

Dander A, Mueller LA, Gallasch R, Pabinger S, Emmert-Streib F, Graber A, Dehmer M.

Source Code Biol Med. 2013 Nov 13;8(1):22. doi: 10.1186/1751-0473-8-22.

12.

GAGE-B: an evaluation of genome assemblers for bacterial organisms.

Magoc T, Pabinger S, Canzar S, Liu X, Su Q, Puiu D, Tallon LJ, Salzberg SL.

Bioinformatics. 2013 Jul 15;29(14):1718-25. doi: 10.1093/bioinformatics/btt273. Epub 2013 May 10.

13.

Genome-scale model management and comparison.

Pabinger S, Trajanoski Z.

Methods Mol Biol. 2013;985:3-16. doi: 10.1007/978-1-62703-299-5_1.

PMID:
23417796
14.

A survey of tools for variant analysis of next-generation genome sequencing data.

Pabinger S, Dander A, Fischer M, Snajder R, Sperk M, Efremova M, Krabichler B, Speicher MR, Zschocke J, Trajanoski Z.

Brief Bioinform. 2014 Mar;15(2):256-78. doi: 10.1093/bib/bbs086. Epub 2013 Jan 21.

15.

SIMPLEX: cloud-enabled pipeline for the comprehensive analysis of exome sequencing data.

Fischer M, Snajder R, Pabinger S, Dander A, Schossig A, Zschocke J, Trajanoski Z, Stocker G.

PLoS One. 2012;7(8):e41948. doi: 10.1371/journal.pone.0041948. Epub 2012 Aug 1.

16.

Mutations in ROGDI Cause Kohlschütter-Tönz Syndrome.

Schossig A, Wolf NI, Fischer C, Fischer M, Stocker G, Pabinger S, Dander A, Steiner B, Tönz O, Kotzot D, Haberlandt E, Amberger A, Burwinkel B, Wimmer K, Fauth C, Grond-Ginsbach C, Koch MJ, Deichmann A, von Kalle C, Bartram CR, Kohlschütter A, Trajanoski Z, Zschocke J.

Am J Hum Genet. 2012 Apr 6;90(4):701-7. doi: 10.1016/j.ajhg.2012.02.012. Epub 2012 Mar 15.

17.

MEMOSys: Bioinformatics platform for genome-scale metabolic models.

Pabinger S, Rader R, Agren R, Nielsen J, Trajanoski Z.

BMC Syst Biol. 2011 Jan 31;5:20. doi: 10.1186/1752-0509-5-20.

18.

QPCR: Application for real-time PCR data management and analysis.

Pabinger S, Thallinger GG, Snajder R, Eichhorn H, Rader R, Trajanoski Z.

BMC Bioinformatics. 2009 Aug 27;10:268. doi: 10.1186/1471-2105-10-268.

19.

Dysfunction of the liver affects the sense of smell.

Temmel AF, Pabinger S, Quint C, Munda P, Ferenci P, Hummel T.

Wien Klin Wochenschr. 2005 Jan;117(1-2):26-30.

PMID:
15986587
20.

Patterns of non-conductive olfactory disorders in eastern Austria: a study of 120 patients from the Department of Otorhinolaryngology at the University of Vienna.

Quint C, Temmel AF, Schickinger B, Pabinger S, Ramberger P, Hummel T.

Wien Klin Wochenschr. 2001 Jan 15;113(1-2):52-7.

PMID:
11233469
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