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Results: 1 to 20 of 128

1.

Advanced solvent based methods for molecular characterization of soil organic matter by high resolution mass spectrometry.

Tfaily M, Chu RK, Tolić N, Roscioli KM, Anderton CR, Paša-Tolić L, Robinson EW, Hess NJ.

Anal Chem. 2015 Apr 17. [Epub ahead of print]

PMID:
25884232
2.

Subunit compositions of Arabidopsis RNA polymerases I and III reveal Pol I- and Pol III-specific forms of the AC40 subunit and alternative forms of the C53 subunit.

Ream TS, Haag JR, Pontvianne F, Nicora CD, Norbeck AD, Paša-Tolić L, Pikaard CS.

Nucleic Acids Res. 2015 Mar 26. pii: gkv247. [Epub ahead of print]

3.

Functional diversification of maize RNA polymerase IV and V subtypes via alternative catalytic subunits.

Haag JR, Brower-Toland B, Krieger EK, Sidorenko L, Nicora CD, Norbeck AD, Irsigler A, LaRue H, Brzeski J, McGinnis K, Ivashuta S, Pasa-Tolic L, Chandler VL, Pikaard CS.

Cell Rep. 2014 Oct 9;9(1):378-90. doi: 10.1016/j.celrep.2014.08.067. Epub 2014 Oct 2.

4.

A method to determine lysine acetylation stoichiometries.

Nakayasu ES, Wu S, Sydor MA, Shukla AK, Weitz KK, Moore RJ, Hixson KK, Kim JS, Petyuk VA, Monroe ME, Pasa-Tolic L, Qian WJ, Smith RD, Adkins JN, Ansong C.

Int J Proteomics. 2014;2014:730725. doi: 10.1155/2014/730725. Epub 2014 Jul 20.

5.

Structural analysis of N- and O-glycans using ZIC-HILIC/dialysis coupled to NMR detection.

Qu Y, Feng J, Deng S, Cao L, Zhang Q, Zhao R, Zhang Z, Jiang Y, Zink EM, Baker SE, Lipton MS, Paša-Tolić L, Hu JZ, Wu S.

Fungal Genet Biol. 2014 Nov;72:207-15. doi: 10.1016/j.fgb.2014.08.001. Epub 2014 Aug 10.

PMID:
25117693
6.

Application of printed circuit board technology to FT-ICR MS analyzer cell construction and prototyping.

Leach FE 3rd, Norheim R, Anderson G, Pasa-Tolic L.

J Am Soc Mass Spectrom. 2014 Dec;25(12):2069-72. doi: 10.1007/s13361-014-0952-6. Epub 2014 Jul 24.

PMID:
25056862
7.

Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes.

Hawley AK, Brewer HM, Norbeck AD, Paša-Tolić L, Hallam SJ.

Proc Natl Acad Sci U S A. 2014 Aug 5;111(31):11395-400. doi: 10.1073/pnas.1322132111. Epub 2014 Jul 22.

8.

High-throughput proteomics.

Zhang Z, Wu S, Stenoien DL, Paša-Tolić L.

Annu Rev Anal Chem (Palo Alto Calif). 2014;7:427-54. doi: 10.1146/annurev-anchem-071213-020216.

PMID:
25014346
9.

Secondary ion mass spectrometry imaging of Dictyostelium discoideum aggregation streams.

DeBord JD, Smith DF, Anderton CR, Heeren RM, Paša-Tolić L, Gomer RH, Fernandez-Lima FA.

PLoS One. 2014 Jun 9;9(6):e99319. doi: 10.1371/journal.pone.0099319. eCollection 2014.

10.

De novo protein sequencing by combining top-down and bottom-up tandem mass spectra.

Liu X, Dekker LJ, Wu S, Vanduijn MM, Luider TM, Tolić N, Kou Q, Dvorkin M, Alexandrova S, Vyatkina K, Paša-Tolić L, Pevzner PA.

J Proteome Res. 2014 Jul 3;13(7):3241-8. doi: 10.1021/pr401300m. Epub 2014 Jun 18.

PMID:
24874765
11.

Automated genome mining of ribosomal peptide natural products.

Mohimani H, Kersten RD, Liu WT, Wang M, Purvine SO, Wu S, Brewer HM, Pasa-Tolic L, Bandeira N, Moore BS, Pevzner PA, Dorrestein PC.

ACS Chem Biol. 2014 Jul 18;9(7):1545-51. doi: 10.1021/cb500199h. Epub 2014 May 23.

PMID:
24802639
12.

Decreased abundance of type III secretion system-inducing signals in Arabidopsis mkp1 enhances resistance against Pseudomonas syringae.

Anderson JC, Wan Y, Kim YM, Pasa-Tolic L, Metz TO, Peck SC.

Proc Natl Acad Sci U S A. 2014 May 6;111(18):6846-51. doi: 10.1073/pnas.1403248111. Epub 2014 Apr 21.

13.

The first pilot project of the consortium for top-down proteomics: a status report.

Dang X, Scotcher J, Wu S, Chu RK, Tolić N, Ntai I, Thomas PM, Fellers RT, Early BP, Zheng Y, Durbin KR, Leduc RD, Wolff JJ, Thompson CJ, Pan J, Han J, Shaw JB, Salisbury JP, Easterling M, Borchers CH, Brodbelt JS, Agar JN, Paša-Tolić L, Kelleher NL, Young NL.

Proteomics. 2014 May;14(10):1130-40. doi: 10.1002/pmic.201300438. Epub 2014 Apr 14.

PMID:
24644084
14.

An integrated top-down and bottom-up proteomic approach to characterize the antigen-binding fragment of antibodies.

Dekker L, Wu S, Vanduijn M, Tolić N, Stingl C, Zhao R, Luider T, Paša-Tolić L.

Proteomics. 2014 May;14(10):1239-48. doi: 10.1002/pmic.201300366. Epub 2014 Apr 13.

PMID:
24634104
15.

Quantitative analysis of human salivary gland-derived intact proteome using top-down mass spectrometry.

Wu S, Brown JN, Tolić N, Meng D, Liu X, Zhang H, Zhao R, Moore RJ, Pevzner P, Smith RD, Paša-Tolić L.

Proteomics. 2014 May;14(10):1211-22. doi: 10.1002/pmic.201300378. Epub 2014 Apr 13.

PMID:
24591407
16.

Characterization of intact N- and O-linked glycopeptides using higher energy collisional dissociation.

Cao L, Tolić N, Qu Y, Meng D, Zhao R, Zhang Q, Moore RJ, Zink EM, Lipton MS, Paša-Tolić L, Wu S.

Anal Biochem. 2014 May 1;452:96-102. doi: 10.1016/j.ab.2014.01.003. Epub 2014 Jan 15.

PMID:
24440233
17.

Proteomic profiling of exosomes leads to the identification of novel biomarkers for prostate cancer.

Duijvesz D, Burnum-Johnson KE, Gritsenko MA, Hoogland AM, Vredenbregt-van den Berg MS, Willemsen R, Luider T, Paša-Tolić L, Jenster G.

PLoS One. 2013 Dec 31;8(12):e82589. doi: 10.1371/journal.pone.0082589. eCollection 2013.

18.

Identification of ultramodified proteins using top-down tandem mass spectra.

Liu X, Hengel S, Wu S, Tolić N, Pasa-Tolić L, Pevzner PA.

J Proteome Res. 2013 Dec 6;12(12):5830-8. doi: 10.1021/pr400849y. Epub 2013 Nov 15.

19.

Molecular tools for investigating microbial community structure and function in oxygen-deficient marine waters.

Hawley AK, Kheirandish S, Mueller A, Leung HT, Norbeck AD, Brewer HM, Pasa-Tolic L, Hallam SJ.

Methods Enzymol. 2013;531:305-29. doi: 10.1016/B978-0-12-407863-5.00016-2.

PMID:
24060128
20.

Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass.

D'haeseleer P, Gladden JM, Allgaier M, Chain PS, Tringe SG, Malfatti SA, Aldrich JT, Nicora CD, Robinson EW, Paša-Tolić L, Hugenholtz P, Simmons BA, Singer SW.

PLoS One. 2013 Jul 19;8(7):e68465. doi: 10.1371/journal.pone.0068465. Print 2013.

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