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Items: 1 to 20 of 430

1.

Finished genome sequence and methylome of the cyanide-degrading Pseudomonas pseudoalcaligenes strain CECT5344 as resolved by single-molecule real-time sequencing.

Wibberg D, Bremges A, Dammann-Kalinowski T, Maus I, Igeño MI, Vogelsang R, König C, Luque-Almagro VM, Roldán MD, Sczyrba A, Moreno-Vivián C, Blasco R, Pühler A, Schlüter A.

J Biotechnol. 2016 Apr 6. pii: S0168-1656(16)30187-0. doi: 10.1016/j.jbiotec.2016.04.008. [Epub ahead of print]

PMID:
27060556
2.

Applying DNA affinity chromatography to specifically screen for sucrose-related DNA-binding transcriptional regulators of Xanthomonas campestris.

Leßmeier L, Alkhateeb RS, Schulte F, Steffens T, Loka TP, Pühler A, Niehaus K, Vorhölter FJ.

J Biotechnol. 2016 Apr 6. pii: S0168-1656(16)30179-1. doi: 10.1016/j.jbiotec.2016.04.007. [Epub ahead of print]

PMID:
27060555
3.

Journal of Biotechnology converts Genome Announcements into Short Genome Communications.

Pühler A.

J Biotechnol. 2016 Apr 6. pii: S0168-1656(16)30173-0. doi: 10.1016/j.jbiotec.2016.04.001. [Epub ahead of print] No abstract available.

PMID:
27059480
4.

Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes.

Wibberg D, Andersson L, Tzelepis G, Rupp O, Blom J, Jelonek L, Pühler A, Fogelqvist J, Varrelmann M, Schlüter A, Dixelius C.

BMC Genomics. 2016 Mar 17;17(1):245. doi: 10.1186/s12864-016-2561-1.

5.

Genome wide transcription start sites analysis of Xanthomonas campestris pv. campestris B100 with insights into the gum gene cluster directing the biosynthesis of the exopolysaccharide xanthan.

Alkhateeb RS, Vorhölter FJ, Rückert C, Mentz A, Wibberg D, Hublik G, Niehaus K, Pühler A.

J Biotechnol. 2016 May 10;225:18-28. doi: 10.1016/j.jbiotec.2016.03.020. Epub 2016 Mar 11.

PMID:
26975844
6.

Intraspecies Transfer of the Chromosomal Acinetobacter baumannii blaNDM-1 Carbapenemase Gene.

Krahn T, Wibberg D, Maus I, Winkler A, Bontron S, Sczyrba A, Nordmann P, Pühler A, Poirel L, Schlüter A.

Antimicrob Agents Chemother. 2016 Apr 22;60(5):3032-40. doi: 10.1128/AAC.00124-16. Print 2016 May.

PMID:
26953198
7.

Back to the Future of Soil Metagenomics.

Nesme J, Achouak W, Agathos SN, Bailey M, Baldrian P, Brunel D, Frostegård Å, Heulin T, Jansson JK, Jurkevitch E, Kruus KL, Kowalchuk GA, Lagares A, Lappin-Scott HM, Lemanceau P, Le Paslier D, Mandic-Mulec I, Murrell JC, Myrold DD, Nalin R, Nannipieri P, Neufeld JD, O'Gara F, Parnell JJ, Pühler A, Pylro V, Ramos JL, Roesch LF, Schloter M, Schleper C, Sczyrba A, Sessitsch A, Sjöling S, Sørensen J, Sørensen SJ, Tebbe CC, Topp E, Tsiamis G, van Elsas JD, van Keulen G, Widmer F, Wagner M, Zhang T, Zhang X, Zhao L, Zhu YG, Vogel TM, Simonet P.

Front Microbiol. 2016 Feb 10;7:73. doi: 10.3389/fmicb.2016.00073. eCollection 2016. No abstract available.

8.

Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670.

Wibberg D, Andersson L, Rupp O, Goesmann A, Pühler A, Varrelmann M, Dixelius C, Schlüter A.

J Biotechnol. 2016 Mar 20;222:11-2. doi: 10.1016/j.jbiotec.2016.02.001. Epub 2016 Feb 3.

PMID:
26851388
9.

Taxonomic analysis of the microbial community in stored sugar beets using high-throughput sequencing of different marker genes.

Liebe S, Wibberg D, Winkler A, Pühler A, Schlüter A, Varrelmann M.

FEMS Microbiol Ecol. 2016 Feb;92(2). pii: fiw004. doi: 10.1093/femsec/fiw004. Epub 2016 Jan 5.

PMID:
26738557
10.

Development of a Rhizoctonia solani AG1-IB Specific Gene Model Enables Comparative Genome Analyses between Phytopathogenic R. solani AG1-IA, AG1-IB, AG3 and AG8 Isolates.

Wibberg D, Rupp O, Blom J, Jelonek L, Kröber M, Verwaaijen B, Goesmann A, Albaum S, Grosch R, Pühler A, Schlüter A.

PLoS One. 2015 Dec 21;10(12):e0144769. doi: 10.1371/journal.pone.0144769. eCollection 2015.

11.

Comparative proteome analysis of Actinoplanes sp. SE50/110 grown with maltose or glucose shows minor differences for acarbose biosynthesis proteins but major differences for saccharide transporters.

Wendler S, Otto A, Ortseifen V, Bonn F, Neshat A, Schneiker-Bekel S, Wolf T, Zemke T, Wehmeier UF, Hecker M, Kalinowski J, Becher D, Pühler A.

J Proteomics. 2016 Jan 10;131:140-8. doi: 10.1016/j.jprot.2015.10.023. Epub 2015 Oct 25.

PMID:
26597626
12.

Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase Gene blaNDM-1.

Krahn T, Wibberg D, Maus I, Winkler A, Nordmann P, Pühler A, Poirel L, Schlüter A.

Genome Announc. 2015 Sep 10;3(5). pii: e01008-15. doi: 10.1128/genomeA.01008-15.

13.

Genome-guided insight into the methylotrophy of Paracoccus aminophilus JCM 7686.

Dziewit L, Czarnecki J, Prochwicz E, Wibberg D, Schlüter A, Pühler A, Bartosik D.

Front Microbiol. 2015 Aug 21;6:852. doi: 10.3389/fmicb.2015.00852. eCollection 2015.

14.

Complete genome analysis of Clostridium bornimense strain M2/40T: A new acidogenic Clostridium species isolated from a mesophilic two-phase laboratory-scale biogas reactor.

Tomazetto G, Hahnke S, Koeck DE, Wibberg D, Maus I, Pühler A, Klocke M, Schlüter A.

J Biotechnol. 2015 Aug 6. pii: S0168-1656(15)30081-X. doi: 10.1016/j.jbiotec.2015.08.001. [Epub ahead of print]

PMID:
26256097
15.

Draft genome sequence of Herbinix hemicellulosilytica T3/55 T, a new thermophilic cellulose degrading bacterium isolated from a thermophilic biogas reactor.

Koeck DE, Maus I, Wibberg D, Winkler A, Zverlov VV, Liebl W, Pühler A, Schwarz WH, Schlüter A.

J Biotechnol. 2015 Nov 20;214:59-60. doi: 10.1016/j.jbiotec.2015.07.022. Epub 2015 Aug 4.

PMID:
26253960
16.

Identification of Oxygen-Responsive Transcripts in the Silage Inoculant Lactobacillus buchneri CD034 by RNA Sequencing.

Eikmeyer FG, Heinl S, Marx H, Pühler A, Grabherr R, Schlüter A.

PLoS One. 2015 Jul 31;10(7):e0134149. doi: 10.1371/journal.pone.0134149. eCollection 2015.

17.

Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant.

Bremges A, Maus I, Belmann P, Eikmeyer F, Winkler A, Albersmeier A, Pühler A, Schlüter A, Sczyrba A.

Gigascience. 2015 Jul 30;4:33. doi: 10.1186/s13742-015-0073-6. eCollection 2015.

18.

Complete Genome Sequence of Acinetobacter baumannii CIP 70.10, a Susceptible Reference Strain for Comparative Genome Analyses.

Krahn T, Wibberg D, Maus I, Winkler A, Pühler A, Poirel L, Schlüter A.

Genome Announc. 2015 Jul 30;3(4). pii: e00850-15. doi: 10.1128/genomeA.00850-15.

19.

Genome Sequence of the Urethral Isolate Pseudomonas aeruginosa RN21.

Wibberg D, Tielen P, Narten M, Schobert M, Blom J, Schatschneider S, Meyer AK, Neubauer R, Albersmeier A, Albaum S, Jahn M, Goesmann A, Vorhölter FJ, Pühler A, Jahn D.

Genome Announc. 2015 Jul 16;3(4). pii: e00788-15. doi: 10.1128/genomeA.00788-15.

20.

The structure of the Cyberlindnera jadinii genome and its relation to Candida utilis analyzed by the occurrence of single nucleotide polymorphisms.

Rupp O, Brinkrolf K, Buerth C, Kunigo M, Schneider J, Jaenicke S, Goesmann A, Pühler A, Jaeger KE, Ernst JF.

J Biotechnol. 2015 Oct 10;211:20-30. doi: 10.1016/j.jbiotec.2015.06.423. Epub 2015 Jul 3.

PMID:
26150016
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