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Results: 1 to 20 of 29

1.

Attomole-level Genomics with Single-molecule Direct DNA, cDNA and RNA Sequencing Technologies.

Ozsolak F.

Curr Issues Mol Biol. 2015 Jul 8;18:43-48. [Epub ahead of print]

2.

Noncoding RNAs that associate with YB-1 alter proliferation in prostate cancer cells.

Liu TT, Arango-Argoty G, Li Z, Lin Y, Kim SW, Dueck A, Ozsolak F, Monaghan AP, Meister G, DeFranco DB, John B.

RNA. 2015 Jun;21(6):1159-72. doi: 10.1261/rna.045559.114. Epub 2015 Apr 22.

PMID:
25904138
3.

Htt CAG repeat expansion confers pleiotropic gains of mutant huntingtin function in chromatin regulation.

Biagioli M, Ferrari F, Mendenhall EM, Zhang Y, Erdin S, Vijayvargia R, Vallabh SM, Solomos N, Manavalan P, Ragavendran A, Ozsolak F, Lee JM, Talkowski ME, Gusella JF, Macdonald ME, Park PJ, Seong IS.

Hum Mol Genet. 2015 May 1;24(9):2442-57. doi: 10.1093/hmg/ddv006. Epub 2015 Jan 8.

PMID:
25574027
4.

Quantitative polyadenylation site mapping with single-molecule direct RNA sequencing.

Ozsolak F.

Methods Mol Biol. 2014;1125:145-55. doi: 10.1007/978-1-62703-971-0_13.

PMID:
24590787
5.

Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast.

Geisberg JV, Moqtaderi Z, Fan X, Ozsolak F, Struhl K.

Cell. 2014 Feb 13;156(4):812-24. doi: 10.1016/j.cell.2013.12.026.

6.

"Jump start and gain" model for dosage compensation in Drosophila based on direct sequencing of nascent transcripts.

Ferrari F, Plachetka A, Alekseyenko AA, Jung YL, Ozsolak F, Kharchenko PV, Park PJ, Kuroda MI.

Cell Rep. 2013 Nov 14;5(3):629-36. doi: 10.1016/j.celrep.2013.09.037. Epub 2013 Oct 31. Erratum in: Cell Rep. 2013 Nov 27;5(4):1157.

7.

Posttranscriptional regulation of cell-cell interaction protein-encoding transcripts by Zfs1p in Schizosaccharomyces pombe.

Wells ML, Huang W, Li L, Gerrish KE, Fargo DC, Ozsolak F, Blackshear PJ.

Mol Cell Biol. 2012 Oct;32(20):4206-14. Epub 2012 Aug 20.

8.

Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.

Sherstnev A, Duc C, Cole C, Zacharaki V, Hornyik C, Ozsolak F, Milos PM, Barton GJ, Simpson GG.

Nat Struct Mol Biol. 2012 Aug;19(8):845-52. doi: 10.1038/nsmb.2345. Epub 2012 Jul 22.

9.

RNA sequencing of pancreatic circulating tumour cells implicates WNT signalling in metastasis.

Yu M, Ting DT, Stott SL, Wittner BS, Ozsolak F, Paul S, Ciciliano JC, Smas ME, Winokur D, Gilman AJ, Ulman MJ, Xega K, Contino G, Alagesan B, Brannigan BW, Milos PM, Ryan DP, Sequist LV, Bardeesy N, Ramaswamy S, Toner M, Maheswaran S, Haber DA.

Nature. 2012 Jul 26;487(7408):510-3. doi: 10.1038/nature11217. Erratum in: Nature. 2012 Oct 25;490(7421):570.

10.

An in-depth map of polyadenylation sites in cancer.

Lin Y, Li Z, Ozsolak F, Kim SW, Arango-Argoty G, Liu TT, Tenenbaum SA, Bailey T, Monaghan AP, Milos PM, John B.

Nucleic Acids Res. 2012 Sep 1;40(17):8460-71. Epub 2012 Jun 29.

11.

Third-generation sequencing techniques and applications to drug discovery.

Ozsolak F.

Expert Opin Drug Discov. 2012 Mar;7(3):231-43. doi: 10.1517/17460441.2012.660145. Epub 2012 Feb 2. Review.

12.

Profiling of short RNAs using Helicos single-molecule sequencing.

Kapranov P, Ozsolak F, Milos PM.

Methods Mol Biol. 2012;822:219-32. doi: 10.1007/978-1-61779-427-8_15.

13.

Gene expression profiles and differential cytoglobin expression in atrophy and adenocarcinoma of the prostate.

Mogal AP, Watson MA, Ozsolak F, Salavaggione L, Humphrey PA.

Prostate. 2012 Jun 15;72(9):931-7. doi: 10.1002/pros.21494. Epub 2011 Oct 24.

PMID:
22025306
14.

Single-molecule direct RNA sequencing without cDNA synthesis.

Ozsolak F, Milos PM.

Wiley Interdiscip Rev RNA. 2011 Jul-Aug;2(4):565-70. doi: 10.1002/wrna.84. Epub 2011 Mar 14. Review.

15.

Transcriptome profiling using single-molecule direct RNA sequencing.

Ozsolak F, Milos PM.

Methods Mol Biol. 2011;733:51-61. doi: 10.1007/978-1-61779-089-8_4.

16.

RNA sequencing: advances, challenges and opportunities.

Ozsolak F, Milos PM.

Nat Rev Genet. 2011 Feb;12(2):87-98. doi: 10.1038/nrg2934. Epub 2010 Dec 30. Review.

17.

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA.

Kapranov P, St Laurent G, Raz T, Ozsolak F, Reynolds CP, Sorensen PH, Reaman G, Milos P, Arceci RJ, Thompson JF, Triche TJ.

BMC Biol. 2010 Dec 21;8:149. doi: 10.1186/1741-7007-8-149. Erratum in: BMC Biol. 2011;9:86.

18.

Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation.

Ozsolak F, Kapranov P, Foissac S, Kim SW, Fishilevich E, Monaghan AP, John B, Milos PM.

Cell. 2010 Dec 10;143(6):1018-29. doi: 10.1016/j.cell.2010.11.020.

19.

The Lkb1 metabolic sensor maintains haematopoietic stem cell survival.

Gurumurthy S, Xie SZ, Alagesan B, Kim J, Yusuf RZ, Saez B, Tzatsos A, Ozsolak F, Milos P, Ferrari F, Park PJ, Shirihai OS, Scadden DT, Bardeesy N.

Nature. 2010 Dec 2;468(7324):659-63. doi: 10.1038/nature09572. Erratum in: Nature. 2011 Aug 4;476(7358):114.

20.

New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism.

Kapranov P, Ozsolak F, Kim SW, Foissac S, Lipson D, Hart C, Roels S, Borel C, Antonarakis SE, Monaghan AP, John B, Milos PM.

Nature. 2010 Jul 29;466(7306):642-6. doi: 10.1038/nature09190.

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