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Results: 1 to 20 of 26

1.

Quantitative polyadenylation site mapping with single-molecule direct RNA sequencing.

Ozsolak F.

Methods Mol Biol. 2014;1125:145-55. doi: 10.1007/978-1-62703-971-0_13.

PMID:
24590787
[PubMed - in process]
2.

Global analysis of mRNA isoform half-lives reveals stabilizing and destabilizing elements in yeast.

Geisberg JV, Moqtaderi Z, Fan X, Ozsolak F, Struhl K.

Cell. 2014 Feb 13;156(4):812-24. doi: 10.1016/j.cell.2013.12.026.

PMID:
24529382
[PubMed - indexed for MEDLINE]
3.

"Jump start and gain" model for dosage compensation in Drosophila based on direct sequencing of nascent transcripts.

Ferrari F, Plachetka A, Alekseyenko AA, Jung YL, Ozsolak F, Kharchenko PV, Park PJ, Kuroda MI.

Cell Rep. 2013 Nov 14;5(3):629-36. doi: 10.1016/j.celrep.2013.09.037. Epub 2013 Oct 31. Erratum in: Cell Rep. 2013 Nov 27;5(4):1157.

PMID:
24183666
[PubMed - in process]
Free PMC Article
4.

Posttranscriptional regulation of cell-cell interaction protein-encoding transcripts by Zfs1p in Schizosaccharomyces pombe.

Wells ML, Huang W, Li L, Gerrish KE, Fargo DC, Ozsolak F, Blackshear PJ.

Mol Cell Biol. 2012 Oct;32(20):4206-14. Epub 2012 Aug 20.

PMID:
22907753
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation.

Sherstnev A, Duc C, Cole C, Zacharaki V, Hornyik C, Ozsolak F, Milos PM, Barton GJ, Simpson GG.

Nat Struct Mol Biol. 2012 Aug;19(8):845-52. doi: 10.1038/nsmb.2345. Epub 2012 Jul 22.

PMID:
22820990
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

RNA sequencing of pancreatic circulating tumour cells implicates WNT signalling in metastasis.

Yu M, Ting DT, Stott SL, Wittner BS, Ozsolak F, Paul S, Ciciliano JC, Smas ME, Winokur D, Gilman AJ, Ulman MJ, Xega K, Contino G, Alagesan B, Brannigan BW, Milos PM, Ryan DP, Sequist LV, Bardeesy N, Ramaswamy S, Toner M, Maheswaran S, Haber DA.

Nature. 2012 Jul 26;487(7408):510-3. doi: 10.1038/nature11217. Erratum in: Nature. 2012 Oct 25;490(7421):570.

PMID:
22763454
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

An in-depth map of polyadenylation sites in cancer.

Lin Y, Li Z, Ozsolak F, Kim SW, Arango-Argoty G, Liu TT, Tenenbaum SA, Bailey T, Monaghan AP, Milos PM, John B.

Nucleic Acids Res. 2012 Sep 1;40(17):8460-71. Epub 2012 Jun 29.

PMID:
22753024
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Third-generation sequencing techniques and applications to drug discovery.

Ozsolak F.

Expert Opin Drug Discov. 2012 Mar;7(3):231-43. doi: 10.1517/17460441.2012.660145. Epub 2012 Feb 2. Review.

PMID:
22468954
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Profiling of short RNAs using Helicos single-molecule sequencing.

Kapranov P, Ozsolak F, Milos PM.

Methods Mol Biol. 2012;822:219-32. doi: 10.1007/978-1-61779-427-8_15.

PMID:
22144202
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Gene expression profiles and differential cytoglobin expression in atrophy and adenocarcinoma of the prostate.

Mogal AP, Watson MA, Ozsolak F, Salavaggione L, Humphrey PA.

Prostate. 2012 Jun 15;72(9):931-7. doi: 10.1002/pros.21494. Epub 2011 Oct 24.

PMID:
22025306
[PubMed - indexed for MEDLINE]
11.

Single-molecule direct RNA sequencing without cDNA synthesis.

Ozsolak F, Milos PM.

Wiley Interdiscip Rev RNA. 2011 Jul-Aug;2(4):565-70. doi: 10.1002/wrna.84. Epub 2011 Mar 14. Review.

PMID:
21957044
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Transcriptome profiling using single-molecule direct RNA sequencing.

Ozsolak F, Milos PM.

Methods Mol Biol. 2011;733:51-61. doi: 10.1007/978-1-61779-089-8_4.

PMID:
21431762
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

RNA sequencing: advances, challenges and opportunities.

Ozsolak F, Milos PM.

Nat Rev Genet. 2011 Feb;12(2):87-98. doi: 10.1038/nrg2934. Epub 2010 Dec 30. Review.

PMID:
21191423
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA.

Kapranov P, St Laurent G, Raz T, Ozsolak F, Reynolds CP, Sorensen PH, Reaman G, Milos P, Arceci RJ, Thompson JF, Triche TJ.

BMC Biol. 2010 Dec 21;8:149. doi: 10.1186/1741-7007-8-149. Erratum in: BMC Biol. 2011;9:86.

PMID:
21176148
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation.

Ozsolak F, Kapranov P, Foissac S, Kim SW, Fishilevich E, Monaghan AP, John B, Milos PM.

Cell. 2010 Dec 10;143(6):1018-29. doi: 10.1016/j.cell.2010.11.020.

PMID:
21145465
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The Lkb1 metabolic sensor maintains haematopoietic stem cell survival.

Gurumurthy S, Xie SZ, Alagesan B, Kim J, Yusuf RZ, Saez B, Tzatsos A, Ozsolak F, Milos P, Ferrari F, Park PJ, Shirihai OS, Scadden DT, Bardeesy N.

Nature. 2010 Dec 2;468(7324):659-63. doi: 10.1038/nature09572. Erratum in: Nature. 2011 Aug 4;476(7358):114.

PMID:
21124451
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

New class of gene-termini-associated human RNAs suggests a novel RNA copying mechanism.

Kapranov P, Ozsolak F, Kim SW, Foissac S, Lipson D, Hart C, Roels S, Borel C, Antonarakis SE, Monaghan AP, John B, Milos PM.

Nature. 2010 Jul 29;466(7306):642-6. doi: 10.1038/nature09190.

PMID:
20671709
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Amplification-free digital gene expression profiling from minute cell quantities.

Ozsolak F, Ting DT, Wittner BS, Brannigan BW, Paul S, Bardeesy N, Ramaswamy S, Milos PM, Haber DA.

Nat Methods. 2010 Aug;7(8):619-21. doi: 10.1038/nmeth.1480. Epub 2010 Jul 18.

PMID:
20639869
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Single-molecule sequencing: sequence methods to enable accurate quantitation.

Hart C, Lipson D, Ozsolak F, Raz T, Steinmann K, Thompson J, Milos PM.

Methods Enzymol. 2010;472:407-30. doi: 10.1016/S0076-6879(10)72002-4.

PMID:
20580974
[PubMed - indexed for MEDLINE]
20.

Digital transcriptome profiling from attomole-level RNA samples.

Ozsolak F, Goren A, Gymrek M, Guttman M, Regev A, Bernstein BE, Milos PM.

Genome Res. 2010 Apr;20(4):519-25. doi: 10.1101/gr.102129.109. Epub 2010 Feb 4.

PMID:
20133332
[PubMed - indexed for MEDLINE]
Free PMC Article

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