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Results: 16

1.

Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.

Mundade R, Ozer HG, Wei H, Prabhu L, Lu T.

Cell Cycle. 2014 Sep 15;13(18):2847-52. doi: 10.4161/15384101.2014.949201.

PMID:
25486472
[PubMed - in process]
2.

Resistance mechanisms for the Bruton's tyrosine kinase inhibitor ibrutinib.

Woyach JA, Furman RR, Liu TM, Ozer HG, Zapatka M, Ruppert AS, Xue L, Li DH, Steggerda SM, Versele M, Dave SS, Zhang J, Yilmaz AS, Jaglowski SM, Blum KA, Lozanski A, Lozanski G, James DF, Barrientos JC, Lichter P, Stilgenbauer S, Buggy JJ, Chang BY, Johnson AJ, Byrd JC.

N Engl J Med. 2014 Jun 12;370(24):2286-94. doi: 10.1056/NEJMoa1400029. Epub 2014 May 28.

PMID:
24869598
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Clinicopathological determinants of positron emission tomography computed tomography fluorodeoxyglucose standardised uptake value in head and neck carcinoma.

Ozer E, Naiboglu B, Karapinar U, Agrawal A, Ozer HG, Schuller DE.

J Laryngol Otol. 2013 Jul;127(7):676-80. doi: 10.1017/S002221511300128X. Epub 2013 Jun 21.

PMID:
23790108
[PubMed - indexed for MEDLINE]
4.

Intensive care unit versus non-intensive care unit postoperative management of head and neck free flaps: comparative effectiveness and cost comparisons.

Arshad H, Ozer HG, Thatcher A, Old M, Ozer E, Agarwal A, Jafari H, Birkheimer D, Basinger H, Forest LA, Schuller DE, Teknos TN.

Head Neck. 2014 Apr;36(4):536-9. doi: 10.1002/hed.23325. Epub 2013 Jun 18.

PMID:
23780531
[PubMed - indexed for MEDLINE]
5.

DFI: gene feature discovery in RNA-seq experiments from multiple sources.

Ozer HG, Parvin JD, Huang K.

BMC Genomics. 2012;13 Suppl 8:S11. doi: 10.1186/1471-2164-13-S8-S11. Epub 2012 Dec 17.

PMID:
23281963
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

JNK3 perpetuates metabolic stress induced by Aβ peptides.

Yoon SO, Park DJ, Ryu JC, Ozer HG, Tep C, Shin YJ, Lim TH, Pastorino L, Kunwar AJ, Walton JC, Nagahara AH, Lu KP, Nelson RJ, Tuszynski MH, Huang K.

Neuron. 2012 Sep 6;75(5):824-37. doi: 10.1016/j.neuron.2012.06.024.

PMID:
22958823
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

From sequencer to supercomputer: an automatic pipeline for managing and processing next generation sequencing data.

Camerlengo T, Ozer HG, Onti-Srinivasan R, Yan P, Huang T, Parvin J, Huang K.

AMIA Jt Summits Transl Sci Proc. 2012;2012:1-10. Epub 2012 Mar 19.

PMID:
22779037
[PubMed]
Free PMC Article
8.

Dysregulation of miR-31 and miR-21 induced by zinc deficiency promotes esophageal cancer.

Alder H, Taccioli C, Chen H, Jiang Y, Smalley KJ, Fadda P, Ozer HG, Huebner K, Farber JL, Croce CM, Fong LY.

Carcinogenesis. 2012 Sep;33(9):1736-44. doi: 10.1093/carcin/bgs204. Epub 2012 Jun 10.

PMID:
22689922
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Neuroendocrine carcinoma of the head and neck: a 20-year case series.

Meacham R, Matrka L, Ozer E, Ozer HG, Wakely P, Shah M.

Ear Nose Throat J. 2012 Mar;91(3):E20-4.

PMID:
22430343
[PubMed - indexed for MEDLINE]
10.

miRNA profiling for biomarker discovery in multiple sclerosis: from microarray to deep sequencing.

Guerau-de-Arellano M, Alder H, Ozer HG, Lovett-Racke A, Racke MK.

J Neuroimmunol. 2012 Jul 15;248(1-2):32-9. doi: 10.1016/j.jneuroim.2011.10.006. Epub 2011 Nov 9. Review.

PMID:
22078708
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Comparing multiple ChIP-sequencing experiments.

Ozer HG, Huang YW, Wu J, Parvin JD, Huang TH, Huang K.

J Bioinform Comput Biol. 2011 Apr;9(2):269-82.

PMID:
21523932
[PubMed - indexed for MEDLINE]
12.

Down-regulation of homeobox genes MEIS1 and HOXA in MLL-rearranged acute leukemia impairs engraftment and reduces proliferation.

Orlovsky K, Kalinkovich A, Rozovskaia T, Shezen E, Itkin T, Alder H, Ozer HG, Carramusa L, Avigdor A, Volinia S, Buchberg A, Mazo A, Kollet O, Largman C, Croce CM, Nakamura T, Lapidot T, Canaani E.

Proc Natl Acad Sci U S A. 2011 May 10;108(19):7956-61. doi: 10.1073/pnas.1103154108. Epub 2011 Apr 25.

PMID:
21518888
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research.

Camerlengo T, Ozer HG, Yan P, Parvin J, Huang T, Huang K, Perez F, Teng M, Li L, Liu Y, Kurc T.

Proceedings (IEEE Int Conf Bioinformatics Biomed). 2009 Nov 1;1-4(Nov 2009):392-395.

PMID:
21151835
[PubMed]
Free PMC Article
14.

Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia.

Zhang J, Xiang Y, Ding L, Keen-Circle K, Borlawsky TB, Ozer HG, Jin R, Payne P, Huang K.

BMC Bioinformatics. 2010 Oct 28;11 Suppl 9:S5. doi: 10.1186/1471-2105-11-S9-S5.

PMID:
21044363
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The impact of surgery in the management of the head and neck carcinoma involving the carotid artery.

Ozer E, Agrawal A, Ozer HG, Schuller DE.

Laryngoscope. 2008 Oct;118(10):1771-4. doi: 10.1097/MLG.0b013e31817f6dc7.

PMID:
18724260
[PubMed - indexed for MEDLINE]
16.

MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments.

Ozer HG, Ray WC.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W133-6.

PMID:
16844976
[PubMed - indexed for MEDLINE]
Free PMC Article
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