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Results: 1 to 20 of 23

1.

P2RP: a Web-based framework for the identification and analysis of regulatory proteins in prokaryotic genomes.

Barakat M, Ortet P, Whitworth DE.

BMC Genomics. 2013 Apr 20;14:269. doi: 10.1186/1471-2164-14-269.

PMID:
23601859
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Host cell subversion by Toxoplasma GRA16, an exported dense granule protein that targets the host cell nucleus and alters gene expression.

Bougdour A, Durandau E, Brenier-Pinchart MP, Ortet P, Barakat M, Kieffer S, Curt-Varesano A, Curt-Bertini RL, Bastien O, Coute Y, Pelloux H, Hakimi MA.

Cell Host Microbe. 2013 Apr 17;13(4):489-500. doi: 10.1016/j.chom.2013.03.002.

PMID:
23601110
[PubMed - indexed for MEDLINE]
Free Article
3.

Reversible oxygen-tolerant hydrogenase carried by free-living N2-fixing bacteria isolated from the rhizospheres of rice, maize, and wheat.

Roumagnac P, Richaud P, Barakat M, Ortet P, Roncato MA, Heulin T, Peltier G, Achouak W, Cournac L.

Microbiologyopen. 2012 Dec;1(4):349-61. doi: 10.1002/mbo3.37. Epub 2012 Sep 12.

PMID:
23233392
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

P2TF: a comprehensive resource for analysis of prokaryotic transcription factors.

Ortet P, De Luca G, Whitworth DE, Barakat M.

BMC Genomics. 2012 Nov 15;13:628. doi: 10.1186/1471-2164-13-628.

PMID:
23153078
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Multiple transcription-activating sequences regulate the RsmZ regulatory small RNA of Pseudomonas brassicacearum.

Lalaouna D, Fochesato S, Barakat M, Ortet P, Achouak W.

J Bacteriol. 2012 Sep;194(18):4888-93. doi: 10.1128/JB.00408-12. Epub 2012 Jul 6.

PMID:
22773788
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Modulation of metabolism and switching to biofilm prevail over exopolysaccharide production in the response of Rhizobium alamii to cadmium.

Schue M, Fekete A, Ortet P, Brutesco C, Heulin T, Schmitt-Kopplin P, Achouak W, Santaella C.

PLoS One. 2011;6(11):e26771. doi: 10.1371/journal.pone.0026771. Epub 2011 Nov 9.

PMID:
22096497
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The cyst-dividing bacterium Ramlibacter tataouinensis TTB310 genome reveals a well-stocked toolbox for adaptation to a desert environment.

De Luca G, Barakat M, Ortet P, Fochesato S, Jourlin-Castelli C, Ansaldi M, Py B, Fichant G, Coutinho PM, Voulhoux R, Bastien O, Maréchal E, Henrissat B, Quentin Y, Noirot P, Filloux A, Méjean V, DuBow MS, Barras F, Barbe V, Weissenbach J, Mihalcescu I, Verméglio A, Achouak W, Heulin T.

PLoS One. 2011;6(9):e23784. doi: 10.1371/journal.pone.0023784. Epub 2011 Sep 1.

PMID:
21912644
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Complete genome sequence of a beneficial plant root-associated bacterium, Pseudomonas brassicacearum.

Ortet P, Barakat M, Lalaouna D, Fochesato S, Barbe V, Vacherie B, Santaella C, Heulin T, Achouak W.

J Bacteriol. 2011 Jun;193(12):3146. doi: 10.1128/JB.00411-11. Epub 2011 Apr 22.

PMID:
21515771
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Where does the alignment score distribution shape come from?

Ortet P, Bastien O.

Evol Bioinform Online. 2010 Dec 12;6:159-87. doi: 10.4137/EBO.S5875.

PMID:
21258650
[PubMed]
Free PMC Article
10.

P2CS: a database of prokaryotic two-component systems.

Barakat M, Ortet P, Whitworth DE.

Nucleic Acids Res. 2011 Jan;39(Database issue):D771-6. doi: 10.1093/nar/gkq1023. Epub 2010 Nov 4.

PMID:
21051349
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A complex small RNA repertoire is generated by a plant/fungal-like machinery and effected by a metazoan-like Argonaute in the single-cell human parasite Toxoplasma gondii.

Braun L, Cannella D, Ortet P, Barakat M, Sautel CF, Kieffer S, Garin J, Bastien O, Voinnet O, Hakimi MA.

PLoS Pathog. 2010 May 27;6(5):e1000920. doi: 10.1371/journal.ppat.1000920.

PMID:
20523899
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Structure, function, and evolution of the Thiomonas spp. genome.

Arsène-Ploetze F, Koechler S, Marchal M, Coppée JY, Chandler M, Bonnefoy V, Brochier-Armanet C, Barakat M, Barbe V, Battaglia-Brunet F, Bruneel O, Bryan CG, Cleiss-Arnold J, Cruveiller S, Erhardt M, Heinrich-Salmeron A, Hommais F, Joulian C, Krin E, Lieutaud A, Lièvremont D, Michel C, Muller D, Ortet P, Proux C, Siguier P, Roche D, Rouy Z, Salvignol G, Slyemi D, Talla E, Weiss S, Weissenbach J, Médigue C, Bertin PN.

PLoS Genet. 2010 Feb 26;6(2):e1000859. doi: 10.1371/journal.pgen.1000859.

PMID:
20195515
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.

Baudet M, Ortet P, Gaillard JC, Fernandez B, Guérin P, Enjalbal C, Subra G, de Groot A, Barakat M, Dedieu A, Armengaud J.

Mol Cell Proteomics. 2010 Feb;9(2):415-26. doi: 10.1074/mcp.M900359-MCP200. Epub 2009 Oct 29.

PMID:
19875382
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

P2CS: a two-component system resource for prokaryotic signal transduction research.

Barakat M, Ortet P, Jourlin-Castelli C, Ansaldi M, Méjean V, Whitworth DE.

BMC Genomics. 2009 Jul 15;10:315. doi: 10.1186/1471-2164-10-315.

PMID:
19604365
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti.

de Groot A, Dulermo R, Ortet P, Blanchard L, Guérin P, Fernandez B, Vacherie B, Dossat C, Jolivet E, Siguier P, Chandler M, Barakat M, Dedieu A, Barbe V, Heulin T, Sommer S, Achouak W, Armengaud J.

PLoS Genet. 2009 Mar;5(3):e1000434. doi: 10.1371/journal.pgen.1000434. Epub 2009 Mar 27.

PMID:
19370165
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Drug inhibition of HDAC3 and epigenetic control of differentiation in Apicomplexa parasites.

Bougdour A, Maubon D, Baldacci P, Ortet P, Bastien O, Bouillon A, Barale JC, Pelloux H, Ménard R, Hakimi MA.

J Exp Med. 2009 Apr 13;206(4):953-66. doi: 10.1084/jem.20082826. Epub 2009 Apr 6.

PMID:
19349466
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The histone methylase KMTox interacts with the redox-sensor peroxiredoxin-1 and targets genes involved in Toxoplasma gondii antioxidant defences.

Sautel CF, Ortet P, Saksouk N, Kieffer S, Garin J, Bastien O, Hakimi MA.

Mol Microbiol. 2009 Jan;71(1):212-26. doi: 10.1111/j.1365-2958.2008.06519.x. Epub 2008 Nov 5.

PMID:
19017266
[PubMed - indexed for MEDLINE]
18.

ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes.

Hu GQ, Zheng X, Yang YF, Ortet P, She ZS, Zhu H.

Nucleic Acids Res. 2008 Jan;36(Database issue):D114-9. Epub 2007 Oct 16.

PMID:
17942412
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

ATM-mediated transcriptional and developmental responses to gamma-rays in Arabidopsis.

Ricaud L, Proux C, Renou JP, Pichon O, Fochesato S, Ortet P, Montané MH.

PLoS One. 2007 May 9;2(5):e430.

PMID:
17487278
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A tale of two oxidation states: bacterial colonization of arsenic-rich environments.

Muller D, Médigue C, Koechler S, Barbe V, Barakat M, Talla E, Bonnefoy V, Krin E, Arsène-Ploetze F, Carapito C, Chandler M, Cournoyer B, Cruveiller S, Dossat C, Duval S, Heymann M, Leize E, Lieutaud A, Lièvremont D, Makita Y, Mangenot S, Nitschke W, Ortet P, Perdrial N, Schoepp B, Siguier P, Simeonova DD, Rouy Z, Segurens B, Turlin E, Vallenet D, Van Dorsselaer A, Weiss S, Weissenbach J, Lett MC, Danchin A, Bertin PN.

PLoS Genet. 2007 Apr 13;3(4):e53. Epub 2007 Mar 5.

PMID:
17432936
[PubMed - indexed for MEDLINE]
Free PMC Article

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