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Results: 12

1.

Enabling transparent and collaborative computational analysis of 12 tumor types within The Cancer Genome Atlas.

Omberg L, Ellrott K, Yuan Y, Kandoth C, Wong C, Kellen MR, Friend SH, Stuart J, Liang H, Margolin AA.

Nat Genet. 2013 Oct;45(10):1121-6. doi: 10.1038/ng.2761.

PMID:
24071850
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

PCAdmix: principal components-based assignment of ancestry along each chromosome in individuals with admixed ancestry from two or more populations.

Brisbin A, Bryc K, Byrnes J, Zakharia F, Omberg L, Degenhardt J, Reynolds A, Ostrer H, Mezey JG, Bustamante CD.

Hum Biol. 2012 Aug;84(4):343-64. doi: 10.3378/027.084.0401.

PMID:
23249312
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Population genetic inference from personal genome data: impact of ancestry and admixture on human genomic variation.

Kidd JM, Gravel S, Byrnes J, Moreno-Estrada A, Musharoff S, Bryc K, Degenhardt JD, Brisbin A, Sheth V, Chen R, McLaughlin SF, Peckham HE, Omberg L, Bormann Chung CA, Stanley S, Pearlstein K, Levandowsky E, Acevedo-Acevedo S, Auton A, Keinan A, Acuña-Alonzo V, Barquera-Lozano R, Canizales-Quinteros S, Eng C, Burchard EG, Russell A, Reynolds A, Clark AG, Reese MG, Lincoln SE, Butte AJ, De La Vega FM, Bustamante CD.

Am J Hum Genet. 2012 Oct 5;91(4):660-71. doi: 10.1016/j.ajhg.2012.08.025.

PMID:
23040495
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Inferring genome-wide patterns of admixture in Qataris using fifty-five ancestral populations.

Omberg L, Salit J, Hackett N, Fuller J, Matthew R, Chouchane L, Rodriguez-Flores JL, Bustamante C, Crystal RG, Mezey JG.

BMC Genet. 2012 Jun 26;13:49. doi: 10.1186/1471-2156-13-49.

PMID:
22734698
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Patterns of ancestry, signatures of natural selection, and genetic association with stature in Western African pygmies.

Jarvis JP, Scheinfeldt LB, Soi S, Lambert C, Omberg L, Ferwerda B, Froment A, Bodo JM, Beggs W, Hoffman G, Mezey J, Tishkoff SA.

PLoS Genet. 2012;8(4):e1002641. doi: 10.1371/journal.pgen.1002641. Epub 2012 Apr 26.

PMID:
22570615
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

RNA-Seq quantification of the human small airway epithelium transcriptome.

Hackett NR, Butler MW, Shaykhiev R, Salit J, Omberg L, Rodriguez-Flores JL, Mezey JG, Strulovici-Barel Y, Wang G, Didon L, Crystal RG.

BMC Genomics. 2012 Feb 29;13:82. doi: 10.1186/1471-2164-13-82.

PMID:
22375630
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Biologic phenotyping of the human small airway epithelial response to cigarette smoking.

Tilley AE, O'Connor TP, Hackett NR, Strulovici-Barel Y, Salit J, Amoroso N, Zhou XK, Raman T, Omberg L, Clark A, Mezey J, Crystal RG.

PLoS One. 2011;6(7):e22798. doi: 10.1371/journal.pone.0022798. Epub 2011 Jul 28.

PMID:
21829517
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Glutathione S-transferase copy number variation alters lung gene expression.

Butler MW, Hackett NR, Salit J, Strulovici-Barel Y, Omberg L, Mezey J, Crystal RG.

Eur Respir J. 2011 Jul;38(1):15-28. doi: 10.1183/09031936.00029210. Epub 2011 Feb 24.

PMID:
21349909
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Threshold of biologic responses of the small airway epithelium to low levels of tobacco smoke.

Strulovici-Barel Y, Omberg L, O'Mahony M, Gordon C, Hollmann C, Tilley AE, Salit J, Mezey J, Harvey BG, Crystal RG.

Am J Respir Crit Care Med. 2010 Dec 15;182(12):1524-32. doi: 10.1164/rccm.201002-0294OC. Epub 2010 Aug 6.

PMID:
20693378
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression.

Omberg L, Meyerson JR, Kobayashi K, Drury LS, Diffley JF, Alter O.

Mol Syst Biol. 2009;5:312. doi: 10.1038/msb.2009.70. Epub 2009 Oct 13.

PMID:
19888207
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Coordinate control of expression of Nrf2-modulated genes in the human small airway epithelium is highly responsive to cigarette smoking.

Hübner RH, Schwartz JD, De Bishnu P, Ferris B, Omberg L, Mezey JG, Hackett NR, Crystal RG.

Mol Med. 2009 Jul-Aug;15(7-8):203-19. doi: 10.2119/molmed.2008.00130. Epub 2009 Mar 20.

PMID:
19593404
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies.

Omberg L, Golub GH, Alter O.

Proc Natl Acad Sci U S A. 2007 Nov 20;104(47):18371-6. Epub 2007 Nov 14.

PMID:
18003902
[PubMed - indexed for MEDLINE]
Free PMC Article

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