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Results: 1 to 20 of 235

1.

esyN: network building, sharing and publishing.

Bean DM, Heimbach J, Ficorella L, Micklem G, Oliver SG, Favrin G.

PLoS One. 2014 Sep 2;9(9):e106035. doi: 10.1371/journal.pone.0106035. eCollection 2014.

PMID:
25181461
[PubMed - in process]
Free PMC Article
2.

The TRiC/CCT chaperone is implicated in Alzheimer's disease based on patient GWAS and an RNAi screen in Aβ-expressing Caenorhabditis elegans.

Khabirova E, Moloney A, Marciniak SJ, Williams J, Lomas DA, Oliver SG, Favrin G, Sattelle DB, Crowther DC.

PLoS One. 2014 Jul 31;9(7):e102985. doi: 10.1371/journal.pone.0102985. eCollection 2014.

PMID:
25080104
[PubMed - in process]
Free PMC Article
3.

Improving functional annotation for industrial microbes: a case study with Pichia pastoris.

Dikicioglu D, Wood V, Rutherford KM, McDowall MD, Oliver SG.

Trends Biotechnol. 2014 Aug;32(8):396-9. doi: 10.1016/j.tibtech.2014.05.003. Epub 2014 Jun 11.

PMID:
24929579
[PubMed - in process]
Free PMC Article
4.

Canto: an online tool for community literature curation.

Rutherford KM, Harris MA, Lock A, Oliver SG, Wood V.

Bioinformatics. 2014 Jun 15;30(12):1791-2. doi: 10.1093/bioinformatics/btu103. Epub 2014 Feb 25.

PMID:
24574118
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A protocol for the subcellular fractionation of Saccharomyces cerevisiae using nitrogen cavitation and density gradient centrifugation.

Wang Y, Lilley KS, Oliver SG.

Yeast. 2014 Apr;31(4):127-35. doi: 10.1002/yea.3002. Epub 2014 Feb 20.

PMID:
24510422
[PubMed - in process]
6.

Identification of novel modifiers of Aβ toxicity by transcriptomic analysis in the fruitfly.

Favrin G, Bean DM, Bilsland E, Boyer H, Fischer BE, Russell S, Crowther DC, Baylis HA, Oliver SG, Giannakou ME.

Sci Rep. 2013 Dec 16;3:3512. doi: 10.1038/srep03512.

PMID:
24336499
[PubMed - in process]
Free PMC Article
7.

Control analysis of the eukaryotic cell cycle using gene copy-number series in yeast tetraploids.

Alcasabas AA, de Clare M, Pir P, Oliver SG.

BMC Genomics. 2013 Oct 31;14:744. doi: 10.1186/1471-2164-14-744.

PMID:
24176122
[PubMed - in process]
Free PMC Article
8.

Yeast cells with impaired drug resistance accumulate glycerol and glucose.

Dikicioglu D, Oc S, Rash BM, Dunn WB, Pir P, Kell DB, Kirdar B, Oliver SG.

Mol Biosyst. 2014 Jan;10(1):93-102. doi: 10.1039/c2mb25512j.

PMID:
24157722
[PubMed - indexed for MEDLINE]
9.

Predicting complex phenotype-genotype interactions to enable yeast engineering: Saccharomyces cerevisiae as a model organism and a cell factory.

Dikicioglu D, Pir P, Oliver SG.

Biotechnol J. 2013 Sep;8(9):1017-34. doi: 10.1002/biot.201300138. Epub 2013 Aug 23. Review. Erratum in: Biotechnol J. 2014 May;9(5):709.

PMID:
24031036
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Investigating the physiological response of Pichia (Komagataella) pastoris GS115 to the heterologous expression of misfolded proteins using chemostat cultures.

Hesketh AR, Castrillo JI, Sawyer T, Archer DB, Oliver SG.

Appl Microbiol Biotechnol. 2013 Sep 11. [Epub ahead of print]

PMID:
24022610
[PubMed - as supplied by publisher]
Free PMC Article
11.

A model of yeast glycolysis based on a consistent kinetic characterisation of all its enzymes.

Smallbone K, Messiha HL, Carroll KM, Winder CL, Malys N, Dunn WB, Murabito E, Swainston N, Dada JO, Khan F, Pir P, Simeonidis E, Spasić I, Wishart J, Weichart D, Hayes NW, Jameson D, Broomhead DS, Oliver SG, Gaskell SJ, McCarthy JE, Paton NW, Westerhoff HV, Kell DB, Mendes P.

FEBS Lett. 2013 Sep 2;587(17):2832-41. doi: 10.1016/j.febslet.2013.06.043. Epub 2013 Jul 4.

PMID:
23831062
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Synergistic effects of TOR and proteasome pathways on the yeast transcriptome and cell growth.

Zhang N, Quan Z, Rash B, Oliver SG.

Open Biol. 2013 May 22;3(5):120137. doi: 10.1098/rsob.120137.

PMID:
23697803
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

FYPO: the fission yeast phenotype ontology.

Harris MA, Lock A, Bähler J, Oliver SG, Wood V.

Bioinformatics. 2013 Jul 1;29(13):1671-8. doi: 10.1093/bioinformatics/btt266. Epub 2013 May 8.

PMID:
23658422
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Copy-number variation of cancer-gene orthologs is sufficient to induce cancer-like symptoms in Saccharomyces cerevisiae.

de Clare M, Oliver SG.

BMC Biol. 2013 Mar 25;11:24. doi: 10.1186/1741-7007-11-24.

PMID:
23531409
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Yeast-based automated high-throughput screens to identify anti-parasitic lead compounds.

Bilsland E, Sparkes A, Williams K, Moss HJ, de Clare M, Pir P, Rowland J, Aubrey W, Pateman R, Young M, Carrington M, King RD, Oliver SG.

Open Biol. 2013 Feb 27;3(2):120158. doi: 10.1098/rsob.120158.

PMID:
23446112
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A prototrophic deletion mutant collection for yeast metabolomics and systems biology.

Mülleder M, Capuano F, Pir P, Christen S, Sauer U, Oliver SG, Ralser M.

Nat Biotechnol. 2012 Dec;30(12):1176-8. doi: 10.1038/nbt.2442. No abstract available.

PMID:
23222782
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

The promiscuous binding of pharmaceutical drugs and their transporter-mediated uptake into cells: what we (need to) know and how we can do so.

Kell DB, Dobson PD, Bilsland E, Oliver SG.

Drug Discov Today. 2013 Mar;18(5-6):218-39. doi: 10.1016/j.drudis.2012.11.008. Epub 2012 Nov 30.

PMID:
23207804
[PubMed - indexed for MEDLINE]
18.

Gene Ontology annotations and resources.

Gene Ontology Consortium, Blake JA, Dolan M, Drabkin H, Hill DP, Li N, Sitnikov D, Bridges S, Burgess S, Buza T, McCarthy F, Peddinti D, Pillai L, Carbon S, Dietze H, Ireland A, Lewis SE, Mungall CJ, Gaudet P, Chrisholm RL, Fey P, Kibbe WA, Basu S, Siegele DA, McIntosh BK, Renfro DP, Zweifel AE, Hu JC, Brown NH, Tweedie S, Alam-Faruque Y, Apweiler R, Auchinchloss A, Axelsen K, Bely B, Blatter M-, Bonilla C, Bouguerleret L, Boutet E, Breuza L, Bridge A, Chan WM, Chavali G, Coudert E, Dimmer E, Estreicher A, Famiglietti L, Feuermann M, Gos A, Gruaz-Gumowski N, Hieta R, Hinz C, Hulo C, Huntley R, James J, Jungo F, Keller G, Laiho K, Legge D, Lemercier P, Lieberherr D, Magrane M, Martin MJ, Masson P, Mutowo-Muellenet P, O'Donovan C, Pedruzzi I, Pichler K, Poggioli D, Porras Millán P, Poux S, Rivoire C, Roechert B, Sawford T, Schneider M, Stutz A, Sundaram S, Tognolli M, Xenarios I, Foulgar R, Lomax J, Roncaglia P, Khodiyar VK, Lovering RC, Talmud PJ, Chibucos M, Giglio MG, Chang H-, Hunter S, McAnulla C, Mitchell A, Sangrador A, Stephan R, Harris MA, Oliver SG, Rutherford K, Wood V, Bahler J, Lock A, Kersey PJ, McDowall DM, Staines DM, Dwinell M, Shimoyama M, Laulederkind S, Hayman T, Wang S-, Petri V, Lowry T, D'Eustachio P, Matthews L, Balakrishnan R, Binkley G, Cherry JM, Costanzo MC, Dwight SS, Engel SR, Fisk DG, Hitz BC, Hong EL, Karra K, Miyasato SR, Nash RS, Park J, Skrzypek MS, Weng S, Wong ED, Berardini TZ, Huala E, Mi H, Thomas PD, Chan J, Kishore R, Sternberg P, Van Auken K, Howe D, Westerfield M.

Nucleic Acids Res. 2013 Jan;41(Database issue):D530-5. doi: 10.1093/nar/gks1050. Epub 2012 Nov 17.

PMID:
23161678
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Short- and long-term dynamic responses of the metabolic network and gene expression in yeast to a transient change in the nutrient environment.

Dikicioglu D, Dunn WB, Kell DB, Kirdar B, Oliver SG.

Mol Biosyst. 2012 Jun;8(6):1760-74. doi: 10.1039/c2mb05443d. Epub 2012 Apr 11.

PMID:
22491778
[PubMed - indexed for MEDLINE]
20.

Genome-wide analysis of longevity in nutrient-deprived Saccharomyces cerevisiae reveals importance of recycling in maintaining cell viability.

Davey HM, Cross EJ, Davey CL, Gkargkas K, Delneri D, Hoyle DC, Oliver SG, Kell DB, Griffith GW.

Environ Microbiol. 2012 May;14(5):1249-60. doi: 10.1111/j.1462-2920.2012.02705.x. Epub 2012 Feb 22.

PMID:
22356628
[PubMed - indexed for MEDLINE]

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