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Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics.

Syme RA, Tan KC, Hane JK, Dodhia K, Stoll T, Hastie M, Furuki E, Ellwood SR, Williams AH, Tan YF, Testa AC, Gorman JJ, Oliver RP.

PLoS One. 2016 Feb 3;11(2):e0147221. doi: 10.1371/journal.pone.0147221. eCollection 2016.


Fine-Mapping the Wheat Snn1 Locus Conferring Sensitivity to the Parastagonospora nodorum Necrotrophic Effector SnTox1 Using an Eight Founder Multiparent Advanced Generation Inter-Cross Population.

Cockram J, Scuderi A, Barber T, Furuki E, Gardner KA, Gosman N, Kowalczyk R, Phan HP, Rose GA, Tan KC, Oliver RP, Mackay IJ.

G3 (Bethesda). 2015 Sep 28;5(11):2257-66. doi: 10.1534/g3.115.021584.


Functional redundancy of necrotrophic effectors - consequences for exploitation for breeding.

Tan KC, Phan HT, Rybak K, John E, Chooi YH, Solomon PS, Oliver RP.

Front Plant Sci. 2015 Jul 8;6:501. doi: 10.3389/fpls.2015.00501. eCollection 2015.


CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.

Testa AC, Hane JK, Ellwood SR, Oliver RP.

BMC Genomics. 2015 Mar 11;16:170. doi: 10.1186/s12864-015-1344-4.


Identification and Characterization of the SnTox6-Snn6 Interaction in the Parastagonospora nodorum-Wheat Pathosystem.

Gao Y, Faris JD, Liu Z, Kim YM, Syme RA, Oliver RP, Xu SS, Friesen TL.

Mol Plant Microbe Interact. 2015 May;28(5):615-25. doi: 10.1094/MPMI-12-14-0396-R.


An in planta-expressed polyketide synthase produces (R)-mellein in the wheat pathogen Parastagonospora nodorum.

Chooi YH, Krill C, Barrow RA, Chen S, Trengove R, Oliver RP, Solomon PS.

Appl Environ Microbiol. 2015 Jan;81(1):177-86. doi: 10.1128/AEM.02745-14. Epub 2014 Oct 17.


Generation of a ToxA knockout strain of the wheat tan spot pathogen Pyrenophora tritici-repentis.

Moffat CS, See PT, Oliver RP.

Mol Plant Pathol. 2014 Dec;15(9):918-26. doi: 10.1111/mpp.12154. Epub 2014 Jun 30.


A reassessment of the risk of rust fungi developing resistance to fungicides.

Oliver RP.

Pest Manag Sci. 2014 Nov;70(11):1641-5. doi: 10.1002/ps.3767. Epub 2014 Mar 26. Review.


Effectors as tools in disease resistance breeding against biotrophic, hemibiotrophic, and necrotrophic plant pathogens.

Vleeshouwers VG, Oliver RP.

Mol Plant Microbe Interact. 2014 Mar;27(3):196-206. doi: 10.1094/MPMI-10-13-0313-IA. Review.


Dissecting the role of G-protein signalling in primary metabolism in the wheat pathogen Stagonospora nodorum.

Gummer JP, Trengove RD, Oliver RP, Solomon PS.

Microbiology. 2013 Sep;159(Pt 9):1972-85. doi: 10.1099/mic.0.067009-0. Epub 2013 Jun 6.


Resequencing and comparative genomics of Stagonospora nodorum: sectional gene absence and effector discovery.

Syme RA, Hane JK, Friesen TL, Oliver RP.

G3 (Bethesda). 2013 Jun 21;3(6):959-69. doi: 10.1534/g3.112.004994.


Global diversity and distribution of three necrotrophic effectors in Phaeosphaeria nodorum and related species.

McDonald MC, Oliver RP, Friesen TL, Brunner PC, McDonald BA.

New Phytol. 2013 Jul;199(1):241-51. doi: 10.1111/nph.12257. Epub 2013 Apr 4.


The usefulness of fungicide mixtures and alternation for delaying the selection for resistance in populations of Mycosphaerella graminicola on winter wheat: a modeling analysis.

Hobbelen PH, Paveley ND, Oliver RP, van den Bosch F.

Phytopathology. 2013 Jul;103(7):690-707. doi: 10.1094/PHYTO-06-12-0142-R.


Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.

Manning VA, Pandelova I, Dhillon B, Wilhelm LJ, Goodwin SB, Berlin AM, Figueroa M, Freitag M, Hane JK, Henrissat B, Holman WH, Kodira CD, Martin J, Oliver RP, Robbertse B, Schackwitz W, Schwartz DC, Spatafora JW, Turgeon BG, Yandava C, Young S, Zhou S, Zeng Q, Grigoriev IV, Ma LJ, Ciuffetti LM.

G3 (Bethesda). 2013 Jan;3(1):41-63. doi: 10.1534/g3.112.004044. Epub 2013 Jan 1.


Evolution of three Pyrenophora cereal pathogens: recent divergence, speciation and evolution of non-coding DNA.

Ellwood SR, Syme RA, Moffat CS, Oliver RP.

Fungal Genet Biol. 2012 Oct;49(10):825-9. doi: 10.1016/j.fgb.2012.07.003. Epub 2012 Jul 28.


A comparative analysis of the heterotrimeric G-protein Gα, Gβ and Gγ subunits in the wheat pathogen Stagonospora nodorum.

Gummer JP, Trengove RD, Oliver RP, Solomon PS.

BMC Microbiol. 2012 Jul 3;12:131. doi: 10.1186/1471-2180-12-131.


Stagonospora nodorum: from pathology to genomics and host resistance.

Oliver RP, Friesen TL, Faris JD, Solomon PS.

Annu Rev Phytopathol. 2012;50:23-43. doi: 10.1146/annurev-phyto-081211-173019. Epub 2012 May 1. Review.


Quantitative variation in effector activity of ToxA isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis.

Tan KC, Ferguson-Hunt M, Rybak K, Waters OD, Stanley WA, Bond CS, Stukenbrock EH, Friesen TL, Faris JD, McDonald BA, Oliver RP.

Mol Plant Microbe Interact. 2012 Apr;25(4):515-22. doi: 10.1094/MPMI-10-11-0273.


The cysteine rich necrotrophic effector SnTox1 produced by Stagonospora nodorum triggers susceptibility of wheat lines harboring Snn1.

Liu Z, Zhang Z, Faris JD, Oliver RP, Syme R, McDonald MC, McDonald BA, Solomon PS, Lu S, Shelver WL, Xu S, Friesen TL.

PLoS Pathog. 2012 Jan;8(1):e1002467. doi: 10.1371/journal.ppat.1002467. Epub 2012 Jan 5.


Phoma medicaginis stimulates the induction of the octadecanoid and phenylpropanoid pathways in Medicago truncatula.

Kamphuis LG, Williams AH, Küster H, Trengove RD, Singh KB, Oliver RP, Ellwood SR.

Mol Plant Pathol. 2012 Aug;13(6):593-603. doi: 10.1111/j.1364-3703.2011.00767.x. Epub 2012 Jan 3.

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