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Items: 1 to 20 of 21

1.

Ploidy influences the functional attributes of de novo lager yeast hybrids.

Krogerus K, Arvas M, De Chiara M, Magalhães F, Mattinen L, Oja M, Vidgren V, Yue JX, Liti G, Gibson B.

Appl Microbiol Biotechnol. 2016 May 17. [Epub ahead of print]

PMID:
27183995
2.

Characterization and mutagenesis of two novel iron-sulphur cluster pentonate dehydratases.

Andberg M, Aro-Kärkkäinen N, Carlson P, Oja M, Bozonnet S, Toivari M, Hakulinen N, O'Donohue M, Penttilä M, Koivula A.

Appl Microbiol Biotechnol. 2016 Apr 22. [Epub ahead of print]

PMID:
27102126
3.

Xylose-induced dynamic effects on metabolism and gene expression in engineered Saccharomyces cerevisiae in anaerobic glucose-xylose cultures.

Alff-Tuomala S, Salusjärvi L, Barth D, Oja M, Penttilä M, Pitkänen JP, Ruohonen L, Jouhten P.

Appl Microbiol Biotechnol. 2016 Jan;100(2):969-85. doi: 10.1007/s00253-015-7038-7. Epub 2015 Oct 10.

PMID:
26454869
4.

Quantitative structure-permeability relationships at various pH values for acidic and basic drugs and drug-like compounds.

Oja M, Maran U.

SAR QSAR Environ Res. 2015;26(7-9):701-19. doi: 10.1080/1062936X.2015.1085896. Epub 2015 Sep 18.

PMID:
26383235
5.

Identification of novel isoprene synthases through genome mining and expression in Escherichia coli.

Ilmén M, Oja M, Huuskonen A, Lee S, Ruohonen L, Jung S.

Metab Eng. 2015 Sep;31:153-62. doi: 10.1016/j.ymben.2015.08.001. Epub 2015 Aug 12.

PMID:
26275749
6.

A novel aldose-aldose oxidoreductase for co-production of D-xylonate and xylitol from D-xylose with Saccharomyces cerevisiae.

Wiebe MG, Nygård Y, Oja M, Andberg M, Ruohonen L, Koivula A, Penttilä M, Toivari M.

Appl Microbiol Biotechnol. 2015 Nov;99(22):9439-47. doi: 10.1007/s00253-015-6878-5. Epub 2015 Aug 12.

7.

Comparison of intracellular and secretion-based strategies for production of human α-galactosidase A in the filamentous fungus Trichoderma reesei.

Smith W, Jäntti J, Oja M, Saloheimo M.

BMC Biotechnol. 2014 Oct 27;14:91. doi: 10.1186/s12896-014-0091-y.

8.

L-arabinose/D-galactose 1-dehydrogenase of Rhizobium leguminosarum bv. trifolii characterised and applied for bioconversion of L-arabinose to L-arabonate with Saccharomyces cerevisiae.

Aro-Kärkkäinen N, Toivari M, Maaheimo H, Ylilauri M, Pentikäinen OT, Andberg M, Oja M, Penttilä M, Wiebe MG, Ruohonen L, Koivula A.

Appl Microbiol Biotechnol. 2014 Dec;98(23):9653-65. doi: 10.1007/s00253-014-6039-2. Epub 2014 Sep 19.

PMID:
25236800
9.

Transcriptome of Saccharomyces cerevisiae during production of D-xylonate.

Mojzita D, Oja M, Rintala E, Wiebe M, Penttilä M, Ruohonen L.

BMC Genomics. 2014 Sep 5;15:763. doi: 10.1186/1471-2164-15-763.

10.

Integration of transcription and flux data reveals molecular paths associated with differences in oxygen-dependent phenotypes of Saccharomyces cerevisiae.

Lindfors E, Jouhten P, Oja M, Rintala E, Orešič M, Penttilä M.

BMC Syst Biol. 2014 Feb 14;8:16. doi: 10.1186/1752-0509-8-16.

11.

Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species.

Pitkänen E, Jouhten P, Hou J, Syed MF, Blomberg P, Kludas J, Oja M, Holm L, Penttilä M, Rousu J, Arvas M.

PLoS Comput Biol. 2014 Feb 6;10(2):e1003465. doi: 10.1371/journal.pcbi.1003465. eCollection 2014 Feb.

12.

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates.

Häkkinen M, Arvas M, Oja M, Aro N, Penttilä M, Saloheimo M, Pakula TM.

Microb Cell Fact. 2012 Oct 4;11:134. doi: 10.1186/1475-2859-11-134.

13.

DrugLogit: logistic discrimination between drugs and nondrugs including disease-specificity by assigning probabilities based on molecular properties.

García-Sosa AT, Oja M, Hetényi C, Maran U.

J Chem Inf Model. 2012 Aug 27;52(8):2165-80. doi: 10.1021/ci200587h. Epub 2012 Aug 7.

PMID:
22830445
14.

A unified multitask architecture for predicting local protein properties.

Qi Y, Oja M, Weston J, Noble WS.

PLoS One. 2012;7(3):e32235. doi: 10.1371/journal.pone.0032235. Epub 2012 Mar 26.

15.

Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties.

Vitikainen M, Arvas M, Pakula T, Oja M, Penttilä M, Saloheimo M.

BMC Genomics. 2010 Jul 19;11:441. doi: 10.1186/1471-2164-11-441.

16.

Evolutionary conservation of orthoretroviral long terminal repeats (LTRs) and ab initio detection of single LTRs in genomic data.

Benachenhou F, Jern P, Oja M, Sperber G, Blikstad V, Somervuo P, Kaski S, Blomberg J.

PLoS One. 2009;4(4):e5179. doi: 10.1371/journal.pone.0005179. Epub 2009 Apr 13.

17.

Methods for estimating human endogenous retrovirus activities from EST databases.

Oja M, Peltonen J, Blomberg J, Kaski S.

BMC Bioinformatics. 2007 May 3;8 Suppl 2:S11.

18.

Self-organizing map-based discovery and visualization of human endogenous retroviral sequence groups.

Oja M, Sperber GO, Blomberg J, Kaski S.

Int J Neural Syst. 2005 Jun;15(3):163-79.

PMID:
16013088
19.

Trustworthiness and metrics in visualizing similarity of gene expression.

Kaski S, Nikkilä J, Oja M, Venna J, Törönen P, Castrén E.

BMC Bioinformatics. 2003 Oct 13;4:48.

20.

Diabetes insipidus and blindness caused by a suprasellar tumor: Pieter Pauw's observations from the 16th century.

Kivelä T, Pelkonen R, Oja M, Heiskanen O.

JAMA. 1998 Jan 7;279(1):48-50.

PMID:
9424043
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