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Results: 1 to 20 of 24

1.

A control engineering model of calcium regulation.

Christie CR, Achenie LE, Ogunnaike BA.

J Clin Endocrinol Metab. 2014 Apr 14:jc20133451. [Epub ahead of print]

PMID:
24731009
[PubMed - as supplied by publisher]
2.

Identification of manipulated variables for a glycosylation control strategy.

St Amand MM, Radhakrishnan D, Robinson AS, Ogunnaike BA.

Biotechnol Bioeng. 2014 Apr 12. doi: 10.1002/bit.25251. [Epub ahead of print]

PMID:
24728980
[PubMed - as supplied by publisher]
3.

Controllability analysis of protein glycosylation in CHO cells.

St Amand MM, Tran K, Radhakrishnan D, Robinson AS, Ogunnaike BA.

PLoS One. 2014 Feb 3;9(2):e87973. doi: 10.1371/journal.pone.0087973. eCollection 2014.

PMID:
24498415
[PubMed - in process]
Free PMC Article
4.

Development of at-line assay to monitor charge variants of MAbs during production.

St Amand MM, Ogunnaike BA, Robinson AS.

Biotechnol Prog. 2014 Jan-Feb;30(1):249-55. doi: 10.1002/btpr.1848. Epub 2013 Dec 30.

PMID:
24382831
[PubMed - in process]
5.

A spatial model for integrin clustering as a result of feedback between integrin activation and integrin binding.

Welf ES, Naik UP, Ogunnaike BA.

Biophys J. 2012 Sep 19;103(6):1379-89. doi: 10.1016/j.bpj.2012.08.021.

PMID:
22995511
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise.

Birtwistle MR, Rauch J, Kiyatkin A, Aksamitiene E, Dobrzyński M, Hoek JB, Kolch W, Ogunnaike BA, Kholodenko BN.

BMC Syst Biol. 2012 Aug 24;6:109. doi: 10.1186/1752-0509-6-109.

PMID:
22920937
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Coordinated dynamic gene expression changes in the central nucleus of the amygdala during alcohol withdrawal.

Freeman K, Staehle MM, Vadigepalli R, Gonye GE, Ogunnaike BA, Hoek JB, Schwaber JS.

Alcohol Clin Exp Res. 2013 Jan;37 Suppl 1:E88-100. doi: 10.1111/j.1530-0277.2012.01910.x. Epub 2012 Jul 24.

PMID:
22827539
[PubMed - indexed for MEDLINE]
8.

Rapid temporal changes in the expression of a set of neuromodulatory genes during alcohol withdrawal in the dorsal vagal complex: molecular evidence of homeostatic disturbance.

Freeman K, Staehle MM, Gümüş ZH, Vadigepalli R, Gonye GE, Nichols CN, Ogunnaike BA, Hoek JB, Schwaber JS.

Alcohol Clin Exp Res. 2012 Oct;36(10):1688-700. doi: 10.1111/j.1530-0277.2012.01791.x. Epub 2012 Apr 6.

PMID:
22486438
[PubMed - indexed for MEDLINE]
9.

A control engineering approach to understanding the TGF-β paradox in cancer.

Chung SW, Cooper CR, Farach-Carson MC, Ogunnaike BA.

J R Soc Interface. 2012 Jun 7;9(71):1389-97. doi: 10.1098/rsif.2011.0799. Epub 2011 Dec 21.

PMID:
22188767
[PubMed - indexed for MEDLINE]
Free PMC Article
10.
11.

Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network.

Miller GM, Ogunnaike BA, Schwaber JS, Vadigepalli R.

BMC Syst Biol. 2010 Dec 17;4:171. doi: 10.1186/1752-0509-4-171.

PMID:
21167049
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Quantitative statistical description of integrin clusters in adherent cells.

Welf ES, Ogunnaike BA, Naik UP.

IET Syst Biol. 2009 Sep;3(5):307-16. doi: 10.1049/iet-syb.2009.0009.

PMID:
21028922
[PubMed - indexed for MEDLINE]
13.

Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics.

Nakakuki T, Birtwistle MR, Saeki Y, Yumoto N, Ide K, Nagashima T, Brusch L, Ogunnaike BA, Okada-Hatakeyama M, Kholodenko BN.

Cell. 2010 May 28;141(5):884-96. doi: 10.1016/j.cell.2010.03.054. Epub 2010 May 20.

PMID:
20493519
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A probabilistic framework for microarray data analysis: fundamental probability models and statistical inference.

Ogunnaike BA, Gelmi CA, Edwards JS.

J Theor Biol. 2010 May 21;264(2):211-22. doi: 10.1016/j.jtbi.2010.02.021. Epub 2010 Feb 17.

PMID:
20170665
[PubMed - indexed for MEDLINE]
15.

Multi-variate approach to global protein aggregation behavior and kinetics: effects of pH, NaCl, and temperature for alpha-chymotrypsinogen A.

Li Y, Ogunnaike BA, Roberts CJ.

J Pharm Sci. 2010 Feb;99(2):645-62. doi: 10.1002/jps.21869.

PMID:
19653264
[PubMed - indexed for MEDLINE]
16.

Quantitative modeling and analysis of the transforming growth factor beta signaling pathway.

Chung SW, Miles FL, Sikes RA, Cooper CR, Farach-Carson MC, Ogunnaike BA.

Biophys J. 2009 Mar 4;96(5):1733-50. doi: 10.1016/j.bpj.2008.11.050.

PMID:
19254534
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Ligand-dependent responses of the ErbB signaling network: experimental and modeling analyses.

Birtwistle MR, Hatakeyama M, Yumoto N, Ogunnaike BA, Hoek JB, Kholodenko BN.

Mol Syst Biol. 2007;3:144. Epub 2007 Nov 13.

PMID:
18004277
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks.

Samant A, Ogunnaike BA, Vlachos DG.

BMC Bioinformatics. 2007 May 24;8:175.

PMID:
17524148
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Designing experiments that aid in the identification of regulatory networks.

Kauffman KJ, Ogunnaike BA, Edwards JS.

Brief Funct Genomic Proteomic. 2006 Feb;4(4):331-42. Epub 2006 Feb 10.

PMID:
17202124
[PubMed - indexed for MEDLINE]
Free Article
20.

Quantifying gene network connectivity in silico: scalability and accuracy of a modular approach.

Yalamanchili N, Zak DE, Ogunnaike BA, Schwaber JS, Kriete A, Kholodenko BN.

Syst Biol (Stevenage). 2006 Jul;153(4):236-46.

PMID:
16986625
[PubMed - indexed for MEDLINE]
Free PMC Article

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