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Results: 1 to 20 of 29

1.

Genomewide analysis of phytochrome proteins in the phylum Basidiomycota.

Lavín JL, Ramírez L, Pisabarro AG, Oguiza JA.

J Basic Microbiol. 2015 Apr 7. doi: 10.1002/jobm.201500078. [Epub ahead of print]

PMID:
25847700
2.

Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi.

Castanera R, Pérez G, López L, Sancho R, Santoyo F, Alfaro M, Gabaldón T, Pisabarro AG, Oguiza JA, Ramírez L.

BMC Genomics. 2014 Dec 5;15:1071. doi: 10.1186/1471-2164-15-1071.

3.

Comparative analysis of secretomes in basidiomycete fungi.

Alfaro M, Oguiza JA, Ramírez L, Pisabarro AG.

J Proteomics. 2014 May 6;102:28-43. doi: 10.1016/j.jprot.2014.03.001. Epub 2014 Mar 12. Review.

PMID:
24631824
4.

Dual-histidine kinases in basidiomycete fungi.

Lavín JL, Sarasola-Puente V, Ramírez L, Pisabarro AG, Oguiza JA.

C R Biol. 2014 Feb;337(2):111-6. doi: 10.1016/j.crvi.2013.12.007. Epub 2014 Feb 10.

PMID:
24581805
5.

SECRETOOL: integrated secretome analysis tool for fungi.

Cortázar AR, Aransay AM, Alfaro M, Oguiza JA, Lavín JL.

Amino Acids. 2014 Feb;46(2):471-3. doi: 10.1007/s00726-013-1649-z. Epub 2013 Dec 27.

PMID:
24370983
6.

FUNGALOXPHOS: an integrated database for oxidative phosphorylation in fungi.

Lavín JL, Marcet-Houben M, Gutiérrez-Vázquez RL, Ramírez L, Pisabarro AG, Gabaldón T, Oguiza JA.

Mitochondrion. 2013 Jul;13(4):357-9. doi: 10.1016/j.mito.2013.04.009. Epub 2013 Apr 28.

PMID:
23628689
7.

Two-component signal transduction in Agaricus bisporus: a comparative genomic analysis with other basidiomycetes through the web-based tool BASID2CS.

Lavín JL, García-Yoldi A, Ramírez L, Pisabarro AG, Oguiza JA.

Fungal Genet Biol. 2013 Jun;55:77-84. doi: 10.1016/j.fgb.2012.09.012. Epub 2012 Oct 31.

PMID:
23123423
8.

Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis.

Fernandez-Fueyo E, Ruiz-Dueñas FJ, Ferreira P, Floudas D, Hibbett DS, Canessa P, Larrondo LF, James TY, Seelenfreund D, Lobos S, Polanco R, Tello M, Honda Y, Watanabe T, Watanabe T, Ryu JS, Kubicek CP, Schmoll M, Gaskell J, Hammel KE, St John FJ, Vanden Wymelenberg A, Sabat G, Splinter BonDurant S, Syed K, Yadav JS, Doddapaneni H, Subramanian V, Lavín JL, Oguiza JA, Perez G, Pisabarro AG, Ramirez L, Santoyo F, Master E, Coutinho PM, Henrissat B, Lombard V, Magnuson JK, Kües U, Hori C, Igarashi K, Samejima M, Held BW, Barry KW, LaButti KM, Lapidus A, Lindquist EA, Lucas SM, Riley R, Salamov AA, Hoffmeister D, Schwenk D, Hadar Y, Yarden O, de Vries RP, Wiebenga A, Stenlid J, Eastwood D, Grigoriev IV, Berka RM, Blanchette RA, Kersten P, Martinez AT, Vicuna R, Cullen D.

Proc Natl Acad Sci U S A. 2012 Apr 3;109(14):5458-63. doi: 10.1073/pnas.1119912109. Epub 2012 Mar 20. Erratum in: Proc Natl Acad Sci U S A. 2012 May 22;109(21):8352. San, Ryu Jae [corrected to Ryu, Jae San].

9.

Genomics and transcriptomics characterization of genes expressed during postharvest at 4°C by the edible basidiomycete Pleurotus ostreatus.

Ramírez L, Oguiza JA, Pérez G, Lavín JL, Omarini A, Santoyo F, Alfaro M, Castanera R, Parenti A, Muguerza E, Pisabarro AG.

Int Microbiol. 2011 Jun;14(2):111-20.

PMID:
22069155
10.

The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi.

Eastwood DC, Floudas D, Binder M, Majcherczyk A, Schneider P, Aerts A, Asiegbu FO, Baker SE, Barry K, Bendiksby M, Blumentritt M, Coutinho PM, Cullen D, de Vries RP, Gathman A, Goodell B, Henrissat B, Ihrmark K, Kauserud H, Kohler A, LaButti K, Lapidus A, Lavin JL, Lee YH, Lindquist E, Lilly W, Lucas S, Morin E, Murat C, Oguiza JA, Park J, Pisabarro AG, Riley R, Rosling A, Salamov A, Schmidt O, Schmutz J, Skrede I, Stenlid J, Wiebenga A, Xie X, Kües U, Hibbett DS, Hoffmeister D, Högberg N, Martin F, Grigoriev IV, Watkinson SC.

Science. 2011 Aug 5;333(6043):762-5. doi: 10.1126/science.1205411. Epub 2011 Jul 14. Erratum in: Science. 2011 Sep 30;333(6051):1825.

11.

Differences in two-component signal transduction proteins among the genus Brucella: implications for host preference and pathogenesis.

Lavín JL, Binnewies TT, Pisabarro AG, Ussery DW, García-Lobo JM, Oguiza JA.

Vet Microbiol. 2010 Aug 26;144(3-4):478-83. doi: 10.1016/j.vetmic.2010.01.007. Epub 2010 Jan 28.

PMID:
20153589
12.

Genomic analysis of two-component signal transduction proteins in basidiomycetes.

Lavín JL, Ramírez L, Ussery DW, Pisabarro AG, Oguiza JA.

J Mol Microbiol Biotechnol. 2010;18(2):63-73. doi: 10.1159/000277654. Epub 2010 Jan 23.

PMID:
20110730
13.

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.

Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavín JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kües U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, Cullen D.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1954-9. doi: 10.1073/pnas.0809575106. Epub 2009 Feb 4.

14.

Comparative genomics of the oxidative phosphorylation system in fungi.

Lavín JL, Oguiza JA, Ramírez L, Pisabarro AG.

Fungal Genet Biol. 2008 Sep;45(9):1248-56. doi: 10.1016/j.fgb.2008.06.005. Epub 2008 Jul 3.

PMID:
18647654
15.

Comparative genomic analysis of two-component regulatory proteins in Pseudomonas syringae.

Lavín JL, Kiil K, Resano O, Ussery DW, Oguiza JA.

BMC Genomics. 2007 Oct 31;8:397.

16.

Molecular and insecticidal characterization of a Cry1I protein toxic to insects of the families Noctuidae, Tortricidae, Plutellidae, and Chrysomelidae.

Ruiz de Escudero I, Estela A, Porcar M, Martínez C, Oguiza JA, Escriche B, Ferré J, Caballero P.

Appl Environ Microbiol. 2006 Jul;72(7):4796-804.

17.

Extracytoplasmic function sigma factors in Pseudomonas syringae.

Oguiza JA, Kiil K, Ussery DW.

Trends Microbiol. 2005 Dec;13(12):565-8. Epub 2005 Oct 28.

PMID:
16257528
18.

The VirPphA/AvrPtoB family of type III effectors in Pseudomonas syringae.

Oguiza JA, Asensio AC.

Res Microbiol. 2005 Apr;156(3):298-303. Epub 2004 Dec 21. Review.

PMID:
15808932
19.
20.

Use of a PCR method on fecal samples for diagnosis of sheep paratuberculosis.

Garrido JM, Cortabarria N, Oguiza JA, Aduriz G, Juste RA.

Vet Microbiol. 2000 Dec 20;77(3-4):379-86.

PMID:
11118723
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