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US Gulf-like toxigenic O1 Vibrio cholerae causing sporadic cholera outbreaks in China.

Luo Y, Octavia S, Jin D, Ye J, Miao Z, Jiang T, Xia S, Lan R.

J Infect. 2016 May;72(5):564-72. doi: 10.1016/j.jinf.2016.02.005. Epub 2016 Feb 23.


Genomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemic.

Safarchi A, Octavia S, Wu SZ, Kaur S, Sintchenko V, Gilbert GL, Wood N, McIntyre P, Marshall H, Keil AD, Lan R.

J Infect. 2016 Apr;72(4):468-77. doi: 10.1016/j.jinf.2016.01.005. Epub 2016 Jan 27.


The relationship between Bordetella pertussis genotype and clinical severity in Australian children with pertussis.

Clarke M, McIntyre PB, Blyth CC, Wood N, Octavia S, Sintchenko V, Giles L, Quinn H, Hill V, Hanly G, Lan R, Marshall HS.

J Infect. 2016 Feb;72(2):171-8. doi: 10.1016/j.jinf.2015.11.004. Epub 2015 Dec 8.


Pertactin negative Bordetella pertussis demonstrates higher fitness under vaccine selection pressure in a mixed infection model.

Safarchi A, Octavia S, Luu LD, Tay CY, Sintchenko V, Wood N, Marshall H, McIntyre P, Lan R.

Vaccine. 2015 Nov 17;33(46):6277-81. doi: 10.1016/j.vaccine.2015.09.064. Epub 2015 Oct 2.


Genomic Variability of Serial Human Isolates of Salmonella enterica Serovar Typhimurium Associated with Prolonged Carriage.

Octavia S, Wang Q, Tanaka MM, Sintchenko V, Lan R.

J Clin Microbiol. 2015 Nov;53(11):3507-14. doi: 10.1128/JCM.01733-15. Epub 2015 Aug 26.


Defining the Core Genome of Salmonella enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing.

Fu S, Octavia S, Tanaka MM, Sintchenko V, Lan R.

J Clin Microbiol. 2015 Aug;53(8):2530-8. doi: 10.1128/JCM.03407-14. Epub 2015 May 27.


Delineation of genetic relatedness and population structure of oral and enteric Campylobacter concisus strains by analysis of housekeeping genes.

Mahendran V, Octavia S, Demirbas OF, Sabrina S, Ma R, Lan R, Riordan SM, Grimm MC, Zhang L.

Microbiology. 2015 Aug;161(8):1600-12. doi: 10.1099/mic.0.000112. Epub 2015 May 22.


Characterization of a large novel phage-like plasmid in Salmonella enterica serovar Typhimurium.

Octavia S, Sara J, Lan R.

FEMS Microbiol Lett. 2015 Apr;362(8):fnv044. doi: 10.1093/femsle/fnv044. Epub 2015 Mar 20.


Virulence variations in Shigella and enteroinvasive Escherichia coli using the Caenorhabditis elegans model.

Fung CC, Octavia S, Mooney AM, Lan R.

FEMS Microbiol Lett. 2015 Jan;362(3):1-5. doi: 10.1093/femsle/fnu045. Epub 2014 Dec 4.


Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: insights into genomic variability within an outbreak.

Octavia S, Wang Q, Tanaka MM, Kaur S, Sintchenko V, Lan R.

J Clin Microbiol. 2015 Apr;53(4):1063-71. doi: 10.1128/JCM.03235-14. Epub 2015 Jan 21.


Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB).

Lam C, Octavia S, Sintchenko V, Gilbert GL, Lan R.

BMC Res Notes. 2014 Oct 15;7:727. doi: 10.1186/1756-0500-7-727.


Global population structure and evolution of Bordetella pertussis and their relationship with vaccination.

Bart MJ, Harris SR, Advani A, Arakawa Y, Bottero D, Bouchez V, Cassiday PK, Chiang CS, Dalby T, Fry NK, Gaillard ME, van Gent M, Guiso N, Hallander HO, Harvill ET, He Q, van der Heide HG, Heuvelman K, Hozbor DF, Kamachi K, Karataev GI, Lan R, LutyƄska A, Maharjan RP, Mertsola J, Miyamura T, Octavia S, Preston A, Quail MA, Sintchenko V, Stefanelli P, Tondella ML, Tsang RS, Xu Y, Yao SM, Zhang S, Parkhill J, Mooi FR.

MBio. 2014 Apr 22;5(2):e01074. doi: 10.1128/mBio.01074-14.


Rapid increase in pertactin-deficient Bordetella pertussis isolates, Australia.

Lam C, Octavia S, Ricafort L, Sintchenko V, Gilbert GL, Wood N, McIntyre P, Marshall H, Guiso N, Keil AD, Lawrence A, Robson J, Hogg G, Lan R.

Emerg Infect Dis. 2014 Apr;20(4):626-33. doi: 10.3201/eid2004.131478.


Population structure and virulence content of avian pathogenic Escherichia coli isolated from outbreaks in Sri Lanka.

Dissanayake DR, Octavia S, Lan R.

Vet Microbiol. 2014 Jan 31;168(2-4):403-12. doi: 10.1016/j.vetmic.2013.11.028. Epub 2013 Dec 11.


Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types.

Pang S, Octavia S, Feng L, Liu B, Reeves PR, Lan R, Wang L.

BMC Genomics. 2013 Oct 20;14:718. doi: 10.1186/1471-2164-14-718.


The prevalence and polymorphisms of zonula occluden toxin gene in multiple Campylobacter concisus strains isolated from saliva of patients with inflammatory bowel disease and controls.

Mahendran V, Tan YS, Riordan SM, Grimm MC, Day AS, Lemberg DA, Octavia S, Lan R, Zhang L.

PLoS One. 2013 Sep 23;8(9):e75525. doi: 10.1371/journal.pone.0075525. eCollection 2013.


Population structure and evolution of non-O1/non-O139 Vibrio cholerae by multilocus sequence typing.

Octavia S, Salim A, Kurniawan J, Lam C, Leung Q, Ahsan S, Reeves PR, Nair GB, Lan R.

PLoS One. 2013 Jun 11;8(6):e65342. doi: 10.1371/journal.pone.0065342. Print 2013.


Molecular analysis of non-O1/non-O139 Vibrio cholerae isolated from hospitalised patients in China.

Luo Y, Ye J, Jin D, Ding G, Zhang Z, Mei L, Octavia S, Lan R.

BMC Microbiol. 2013 Mar 4;13:52. doi: 10.1186/1471-2180-13-52.


Investigation of the enteric pathogenic potential of oral Campylobacter concisus strains isolated from patients with inflammatory bowel disease.

Ismail Y, Mahendran V, Octavia S, Day AS, Riordan SM, Grimm MC, Lan R, Lemberg D, Tran TA, Zhang L.

PLoS One. 2012;7(5):e38217. doi: 10.1371/journal.pone.0038217. Epub 2012 May 30.


Multi-locus variable number tandem repeat analysis of 7th pandemic Vibrio cholerae.

Lam C, Octavia S, Reeves PR, Lan R.

BMC Microbiol. 2012 May 24;12:82. doi: 10.1186/1471-2180-12-82.

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