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Items: 12


The Chironomus tentans genome sequence and the organization of the Balbiani ring genes.

Kutsenko A, Svensson T, Nystedt B, Lundeberg J, Björk P, Sonnhammer E, Giacomello S, Visa N, Wieslander L.

BMC Genomics. 2014 Sep 27;15:819. doi: 10.1186/1471-2164-15-819.


BESST--efficient scaffolding of large fragmented assemblies.

Sahlin K, Vezzi F, Nystedt B, Lundeberg J, Arvestad L.

BMC Bioinformatics. 2014 Aug 15;15:281. doi: 10.1186/1471-2105-15-281.


Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools.

Alexeyenko A, Nystedt B, Vezzi F, Sherwood E, Ye R, Knudsen B, Simonsen M, Turner B, de Jong P, Wu CC, Lundeberg J.

BMC Genomics. 2014 Jun 6;15:439. doi: 10.1186/1471-2164-15-439.


The Norway spruce genome sequence and conifer genome evolution.

Nystedt B, Street NR, Wetterbom A, Zuccolo A, Lin YC, Scofield DG, Vezzi F, Delhomme N, Giacomello S, Alexeyenko A, Vicedomini R, Sahlin K, Sherwood E, Elfstrand M, Gramzow L, Holmberg K, Hällman J, Keech O, Klasson L, Koriabine M, Kucukoglu M, Käller M, Luthman J, Lysholm F, Niittylä T, Olson A, Rilakovic N, Ritland C, Rosselló JA, Sena J, Svensson T, Talavera-López C, Theißen G, Tuominen H, Vanneste K, Wu ZQ, Zhang B, Zerbe P, Arvestad L, Bhalerao R, Bohlmann J, Bousquet J, Garcia Gil R, Hvidsten TR, de Jong P, MacKay J, Morgante M, Ritland K, Sundberg B, Thompson SL, Van de Peer Y, Andersson B, Nilsson O, Ingvarsson PK, Lundeberg J, Jansson S.

Nature. 2013 May 30;497(7451):579-84. doi: 10.1038/nature12211. Epub 2013 May 22.


A gene transfer agent and a dynamic repertoire of secretion systems hold the keys to the explosive radiation of the emerging pathogen Bartonella.

Guy L, Nystedt B, Toft C, Zaremba-Niedzwiedzka K, Berglund EC, Granberg F, Näslund K, Eriksson AS, Andersson SG.

PLoS Genet. 2013 Mar;9(3):e1003393. doi: 10.1371/journal.pgen.1003393. Epub 2013 Mar 28.


Hierarchical molecular tagging to resolve long continuous sequences by massively parallel sequencing.

Lundin S, Gruselius J, Nystedt B, Lexow P, Käller M, Lundeberg J.

Sci Rep. 2013;3:1186. doi: 10.1038/srep01186.


Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis.

Gioti A, Nystedt B, Li W, Xu J, Andersson A, Averette AF, Münch K, Wang X, Kappauf C, Kingsbury JM, Kraak B, Walker LA, Johansson HJ, Holm T, Lehtiö J, Stajich JE, Mieczkowski P, Kahmann R, Kennell JC, Cardenas ME, Lundeberg J, Saunders CW, Boekhout T, Dawson TL, Munro CA, de Groot PW, Butler G, Heitman J, Scheynius A.

MBio. 2013 Jan 22;4(1):e00572-12. doi: 10.1128/mBio.00572-12.


A genome-wide study of recombination rate variation in Bartonella henselae.

Guy L, Nystedt B, Sun Y, Näslund K, Berglund EC, Andersson SG.

BMC Evol Biol. 2012 May 11;12:65. doi: 10.1186/1471-2148-12-65.


Amplified fragment length polymorphism (AFLP) analysis of closely related wild and captive tsetse fly (Glossina morsitans morsitans) populations.

Lall GK, Darby AC, Nystedt B, Macleod ET, Bishop RP, Welburn SC.

Parasit Vectors. 2010 May 26;3:47. doi: 10.1186/1756-3305-3-47.


Computational resources in infectious disease: limitations and challenges.

Berglund EC, Nystedt B, Andersson SG.

PLoS Comput Biol. 2009 Oct;5(10):e1000481. doi: 10.1371/journal.pcbi.1000481. Epub 2009 Oct 26. Review. No abstract available.


Endosymbiont gene functions impaired and rescued by polymerase infidelity at poly(A) tracts.

Tamas I, Wernegreen JJ, Nystedt B, Kauppinen SN, Darby AC, Gomez-Valero L, Lundin D, Poole AM, Andersson SG.

Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14934-9. doi: 10.1073/pnas.0806554105. Epub 2008 Sep 24.


Diversifying selection and concerted evolution of a type IV secretion system in Bartonella.

Nystedt B, Frank AC, Thollesson M, Andersson SG.

Mol Biol Evol. 2008 Feb;25(2):287-300. Epub 2007 Dec 7.

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