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Results: 1 to 20 of 31

1.

Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression.

Küffner R, Zach N, Norel R, Hawe J, Schoenfeld D, Wang L, Li G, Fang L, Mackey L, Hardiman O, Cudkowicz M, Sherman A, Ertaylan G, Grosse-Wentrup M, Hothorn T, van Ligtenberg J, Macke JH, Meyer T, Schölkopf B, Tran L, Vaughan R, Stolovitzky G, Leitner ML.

Nat Biotechnol. 2014 Nov 2. doi: 10.1038/nbt.3051. [Epub ahead of print]

PMID:
25362243
[PubMed - as supplied by publisher]
2.

A crowd-sourcing approach for the construction of species-specific cell signaling networks.

Bilal E, Sakellaropoulos T, Participants C, Melas IN, Messinis DE, Belcastro V, Rhrissorrakrai K, Meyer P, Norel R, Iskandar A, Blaese E, Rice JJ, Peitsch MC, Hoeng J, Stolovitzky G, Alexopoulos LG, Poussin C.

Bioinformatics. 2014 Oct 7. pii: btu659. [Epub ahead of print]

PMID:
25294919
[PubMed - as supplied by publisher]
Free Article
3.

Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge.

Rhrissorrakrai K, Belcastro V, Bilal E, Norel R, Poussin C, Mathis C, Dulize RH, Ivanov NV, Alexopoulos L, Rice JJ, Peitsch M, Stolovitzky G, Meyer P, Hoeng J.

Bioinformatics. 2014 Sep 17. pii: btu611. [Epub ahead of print]

PMID:
25236459
[PubMed - as supplied by publisher]
Free Article
4.

Inter-species inference of gene set enrichment in lung epithelial cells from proteomic and large transcriptomic datasets.

Hormoz S, Bhanot G, Biehl M, Bilal E, Meyer P, Norel R, Rhrissorrakrai K, Dayarian A.

Bioinformatics. 2014 Aug 24. pii: btu569. [Epub ahead of print]

PMID:
25152231
[PubMed - as supplied by publisher]
Free Article
5.

Inter-species pathway perturbation prediction via data-driven detection of functional homology.

Hafemeister C, Romero R, Bilal E, Meyer P, Norel R, Rhrissorrakrai K, Bonneau R, Tarca AL.

Bioinformatics. 2014 Aug 22. pii: btu570. [Epub ahead of print]

PMID:
25150249
[PubMed - as supplied by publisher]
6.

Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge.

Dayarian A, Romero R, Wang Z, Biehl M, Bilal E, Hormoz S, Meyer P, Norel R, Rhrissorrakrai K, Bhanot G, Luo F, Tarca AL.

Bioinformatics. 2014 Jul 23. pii: btu490. [Epub ahead of print]

PMID:
25061067
[PubMed - as supplied by publisher]
7.

Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge.

Biehl M, Sadowski P, Bhanot G, Bilal E, Dayarian A, Meyer P, Norel R, Rhrissorrakrai K, Zeller MD, Hormoz S.

Bioinformatics. 2014 Jul 3. pii: btu407. [Epub ahead of print]

PMID:
24994890
[PubMed - as supplied by publisher]
Free Article
8.

On Crowd-verification of Biological Networks.

sbv IMPROVER project team (in alphabetical order), Ansari S, Binder J, Boue S, Di Fabio A, Hayes W, Hoeng J, Iskandar A, Kleiman R, Norel R, O'Neel B, Peitsch MC, Poussin C, Pratt D, Rhrissorrakrai K, Schlage WK, Stolovitzky G, Talikka M.

Bioinform Biol Insights. 2013 Oct 10;7:307-25. doi: 10.4137/BBI.S12932. eCollection 2013.

PMID:
24151423
[PubMed]
Free PMC Article
9.

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge.

Tarca AL, Lauria M, Unger M, Bilal E, Boue S, Kumar Dey K, Hoeng J, Koeppl H, Martin F, Meyer P, Nandy P, Norel R, Peitsch M, Rice JJ, Romero R, Stolovitzky G, Talikka M, Xiang Y, Zechner C; IMPROVER DSC Collaborators.

Bioinformatics. 2013 Nov 15;29(22):2892-9. doi: 10.1093/bioinformatics/btt492. Epub 2013 Aug 20.

PMID:
23966112
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach.

Meyer P, Siwo G, Zeevi D, Sharon E, Norel R; DREAM6 Promoter Prediction Consortium, Segal E, Stolovitzky G.

Genome Res. 2013 Nov;23(11):1928-37. doi: 10.1101/gr.157420.113. Epub 2013 Aug 15.

PMID:
23950146
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Critical assessment of automated flow cytometry data analysis techniques.

Aghaeepour N, Finak G; FlowCAP Consortium; DREAM Consortium, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH.

Nat Methods. 2013 Mar;10(3):228-38. doi: 10.1038/nmeth.2365. Epub 2013 Feb 10. Erratum in: Nat Methods. 2013 May;10(5):445.

PMID:
23396282
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Evaluation of methods for modeling transcription factor sequence specificity.

Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S; DREAM5 Consortium, Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, Hughes TR.

Nat Biotechnol. 2013 Feb;31(2):126-34. doi: 10.1038/nbt.2486. Epub 2013 Jan 27.

PMID:
23354101
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Industrial methodology for process verification in research (IMPROVER): toward systems biology verification.

Meyer P, Hoeng J, Rice JJ, Norel R, Sprengel J, Stolle K, Bonk T, Corthesy S, Royyuru A, Peitsch MC, Stolovitzky G.

Bioinformatics. 2012 May 1;28(9):1193-201. doi: 10.1093/bioinformatics/bts116. Epub 2012 Mar 14. Review.

PMID:
22423044
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The self-assessment trap: can we all be better than average?

Norel R, Rice JJ, Stolovitzky G.

Mol Syst Biol. 2011 Oct 11;7:537. doi: 10.1038/msb.2011.70. No abstract available.

PMID:
21988833
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Verification of systems biology research in the age of collaborative competition.

Meyer P, Alexopoulos LG, Bonk T, Califano A, Cho CR, de la Fuente A, de Graaf D, Hartemink AJ, Hoeng J, Ivanov NV, Koeppl H, Linding R, Marbach D, Norel R, Peitsch MC, Rice JJ, Royyuru A, Schacherer F, Sprengel J, Stolle K, Vitkup D, Stolovitzky G.

Nat Biotechnol. 2011 Sep 8;29(9):811-5. doi: 10.1038/nbt.1968. No abstract available.

PMID:
21904331
[PubMed - indexed for MEDLINE]
16.

Protein interface conservation across structure space.

Zhang QC, Petrey D, Norel R, Honig BH.

Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10896-901. doi: 10.1073/pnas.1005894107. Epub 2010 Jun 1.

PMID:
20534496
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

PUDGE: a flexible, interactive server for protein structure prediction.

Norel R, Petrey D, Honig B.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W550-4. doi: 10.1093/nar/gkq475. Epub 2010 Jun 4.

PMID:
20525783
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

MicroRNA-23b cluster microRNAs regulate transforming growth factor-beta/bone morphogenetic protein signaling and liver stem cell differentiation by targeting Smads.

Rogler CE, Levoci L, Ader T, Massimi A, Tchaikovskaya T, Norel R, Rogler LE.

Hepatology. 2009 Aug;50(2):575-84. doi: 10.1002/hep.22982.

PMID:
19582816
[PubMed - indexed for MEDLINE]
19.

Transcriptional profiling implicates TGFbeta/BMP and Notch signaling pathways in ductular differentiation of fetal murine hepatoblasts.

Ader T, Norel R, Levoci L, Rogler LE.

Mech Dev. 2006 Feb;123(2):177-94. Epub 2006 Jan 18.

PMID:
16412614
[PubMed - indexed for MEDLINE]
Free Article
20.

cDNA microarray analysis of HBV transgenic mouse liver identifies genes in lipid biosynthetic and growth control pathways affected by HBV.

Hajjou M, Norel R, Carver R, Marion P, Cullen J, Rogler LE, Rogler CE.

J Med Virol. 2005 Sep;77(1):57-65.

PMID:
16032730
[PubMed - indexed for MEDLINE]
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