Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 28

1.

Inter-species Inference of Gene Set Enrichment in Lung Epithelial Cells from Proteomic and Large Transcriptomic Data Sets.

Hormoz S, Bhanot G, Biehl M, Bilal E, Meyer P, Norel R, Rhrissorrakrai K, Dayarian A.

Bioinformatics. 2014 Aug 24. pii: btu569. [Epub ahead of print]

PMID:
25152231
[PubMed - as supplied by publisher]
Free Article
2.

Inter-Species Pathway Perturbation Prediction via Data Driven Detection of Functional Homology.

Hafemeister C, Romero R, Bilal E, Meyer P, Norel R, Rhrissorrakrai K, Bonneau R, Tarca AL.

Bioinformatics. 2014 Aug 22. pii: btu570. [Epub ahead of print]

PMID:
25150249
[PubMed - as supplied by publisher]
3.

Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge.

Dayarian A, Romero R, Wang Z, Biehl M, Bilal E, Hormoz S, Meyer P, Norel R, Rhrissorrakrai K, Bhanot G, Luo F, Tarca AL.

Bioinformatics. 2014 Jul 23. pii: btu490. [Epub ahead of print]

PMID:
25061067
[PubMed - as supplied by publisher]
4.

Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge.

Biehl M, Sadowski P, Bhanot G, Bilal E, Dayarian A, Meyer P, Norel R, Rhrissorrakrai K, Zeller MD, Hormoz S.

Bioinformatics. 2014 Jul 3. pii: btu407. [Epub ahead of print]

PMID:
24994890
[PubMed - as supplied by publisher]
Free Article
5.

On Crowd-verification of Biological Networks.

sbv IMPROVER project team (in alphabetical order), Ansari S, Binder J, Boue S, Di Fabio A, Hayes W, Hoeng J, Iskandar A, Kleiman R, Norel R, O'Neel B, Peitsch MC, Poussin C, Pratt D, Rhrissorrakrai K, Schlage WK, Stolovitzky G, Talikka M.

Bioinform Biol Insights. 2013 Oct 10;7:307-25. doi: 10.4137/BBI.S12932. eCollection 2013.

PMID:
24151423
[PubMed]
Free PMC Article
6.

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge.

Tarca AL, Lauria M, Unger M, Bilal E, Boue S, Kumar Dey K, Hoeng J, Koeppl H, Martin F, Meyer P, Nandy P, Norel R, Peitsch M, Rice JJ, Romero R, Stolovitzky G, Talikka M, Xiang Y, Zechner C; IMPROVER DSC Collaborators.

Bioinformatics. 2013 Nov 15;29(22):2892-9. doi: 10.1093/bioinformatics/btt492. Epub 2013 Aug 20.

PMID:
23966112
[PubMed - indexed for MEDLINE]
7.

Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach.

Meyer P, Siwo G, Zeevi D, Sharon E, Norel R; DREAM6 Promoter Prediction Consortium, Segal E, Stolovitzky G.

Genome Res. 2013 Nov;23(11):1928-37. doi: 10.1101/gr.157420.113. Epub 2013 Aug 15.

PMID:
23950146
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Critical assessment of automated flow cytometry data analysis techniques.

Aghaeepour N, Finak G; FlowCAP Consortium; DREAM Consortium, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH.

Nat Methods. 2013 Mar;10(3):228-38. doi: 10.1038/nmeth.2365. Epub 2013 Feb 10. Erratum in: Nat Methods. 2013 May;10(5):445.

PMID:
23396282
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Evaluation of methods for modeling transcription factor sequence specificity.

Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S; DREAM5 Consortium, Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, Hughes TR.

Nat Biotechnol. 2013 Feb;31(2):126-34. doi: 10.1038/nbt.2486. Epub 2013 Jan 27.

PMID:
23354101
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Industrial methodology for process verification in research (IMPROVER): toward systems biology verification.

Meyer P, Hoeng J, Rice JJ, Norel R, Sprengel J, Stolle K, Bonk T, Corthesy S, Royyuru A, Peitsch MC, Stolovitzky G.

Bioinformatics. 2012 May 1;28(9):1193-201. doi: 10.1093/bioinformatics/bts116. Epub 2012 Mar 14. Review.

PMID:
22423044
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The self-assessment trap: can we all be better than average?

Norel R, Rice JJ, Stolovitzky G.

Mol Syst Biol. 2011 Oct 11;7:537. doi: 10.1038/msb.2011.70. No abstract available.

PMID:
21988833
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Verification of systems biology research in the age of collaborative competition.

Meyer P, Alexopoulos LG, Bonk T, Califano A, Cho CR, de la Fuente A, de Graaf D, Hartemink AJ, Hoeng J, Ivanov NV, Koeppl H, Linding R, Marbach D, Norel R, Peitsch MC, Rice JJ, Royyuru A, Schacherer F, Sprengel J, Stolle K, Vitkup D, Stolovitzky G.

Nat Biotechnol. 2011 Sep 8;29(9):811-5. doi: 10.1038/nbt.1968. No abstract available.

PMID:
21904331
[PubMed - indexed for MEDLINE]
13.

Protein interface conservation across structure space.

Zhang QC, Petrey D, Norel R, Honig BH.

Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10896-901. doi: 10.1073/pnas.1005894107. Epub 2010 Jun 1.

PMID:
20534496
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

PUDGE: a flexible, interactive server for protein structure prediction.

Norel R, Petrey D, Honig B.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W550-4. doi: 10.1093/nar/gkq475. Epub 2010 Jun 4.

PMID:
20525783
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

MicroRNA-23b cluster microRNAs regulate transforming growth factor-beta/bone morphogenetic protein signaling and liver stem cell differentiation by targeting Smads.

Rogler CE, Levoci L, Ader T, Massimi A, Tchaikovskaya T, Norel R, Rogler LE.

Hepatology. 2009 Aug;50(2):575-84. doi: 10.1002/hep.22982.

PMID:
19582816
[PubMed - indexed for MEDLINE]
16.

Transcriptional profiling implicates TGFbeta/BMP and Notch signaling pathways in ductular differentiation of fetal murine hepatoblasts.

Ader T, Norel R, Levoci L, Rogler LE.

Mech Dev. 2006 Feb;123(2):177-94. Epub 2006 Jan 18.

PMID:
16412614
[PubMed - indexed for MEDLINE]
Free Article
17.

cDNA microarray analysis of HBV transgenic mouse liver identifies genes in lipid biosynthetic and growth control pathways affected by HBV.

Hajjou M, Norel R, Carver R, Marion P, Cullen J, Rogler LE, Rogler CE.

J Med Virol. 2005 Sep;77(1):57-65.

PMID:
16032730
[PubMed - indexed for MEDLINE]
18.

RNA expression microarrays (REMs), a high-throughput method to measure differences in gene expression in diverse biological samples.

Rogler CE, Tchaikovskaya T, Norel R, Massimi A, Plescia C, Rubashevsky E, Siebert P, Rogler LE.

Nucleic Acids Res. 2004 Aug 25;32(15):e120.

PMID:
15329382
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Electrostatic contributions to protein-protein interactions: fast energetic filters for docking and their physical basis.

Norel R, Sheinerman F, Petrey D, Honig B.

Protein Sci. 2001 Nov;10(11):2147-61.

PMID:
11604522
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Electrostatic aspects of protein-protein interactions.

Sheinerman FB, Norel R, Honig B.

Curr Opin Struct Biol. 2000 Apr;10(2):153-9. Review.

PMID:
10753808
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Loading ...
Write to the Help Desk